Variant report

Variant	rs28626417
Chromosome Location	chr15:50470514-50470515
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:50467982..50471005-chr15:50472015..50474960,3	K562	blood:
2	chr15:50458627..50460715-chr15:50469369..50472298,3	MCF-7	breast:
3	chr15:50469679..50472547-chr15:50486298..50487942,2	K562	blood:
4	chr15:50467355..50470733-chr15:50646637..50649542,3	MCF-7	breast:
5	chr15:50468307..50471264-chr15:50485331..50487376,2	MCF-7	breast:
6	chr15:50467355..50471725-chr15:50472590..50476419,7	MCF-7	breast:
7	chr15:50464723..50468254-chr15:50470192..50472116,3	K562	blood:

Variant related genes	Relation type
ENSG00000104064	Chromatin interaction
ENSG00000140284	Chromatin interaction
ENSG00000104043	Chromatin interaction
ENSG00000244879	Chromatin interaction

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10519261	1.00[ASN][1000 genomes]
rs1124609	1.00[ASN][1000 genomes]
rs11630182	1.00[ASN][1000 genomes]
rs11632154	1.00[ASN][1000 genomes]
rs11636227	1.00[ASN][1000 genomes]
rs11637894	1.00[ASN][1000 genomes]
rs12898586	1.00[ASN][1000 genomes]
rs12899687	1.00[ASN][1000 genomes]
rs12906611	1.00[ASN][1000 genomes]
rs12907171	1.00[ASN][1000 genomes]
rs12907571	1.00[ASN][1000 genomes]
rs12912492	1.00[ASN][1000 genomes]
rs12916163	1.00[ASN][1000 genomes]
rs1648347	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17415291	1.00[ASN][1000 genomes]
rs17415452	1.00[ASN][1000 genomes]
rs17415911	1.00[ASN][1000 genomes]
rs17499601	1.00[ASN][1000 genomes]
rs17499691	1.00[ASN][1000 genomes]
rs17499837	1.00[ASN][1000 genomes]
rs17507157	0.85[AMR][1000 genomes]
rs1863510	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2414023	1.00[ASN][1000 genomes]
rs28419107	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs28419389	1.00[ASN][1000 genomes]
rs28589332	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs28689603	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28726225	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28883893	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34398655	1.00[ASN][1000 genomes]
rs34958490	1.00[ASN][1000 genomes]
rs35007117	1.00[ASN][1000 genomes]
rs35607381	1.00[ASN][1000 genomes]
rs35616430	1.00[ASN][1000 genomes]
rs35796860	1.00[ASN][1000 genomes]
rs62020328	1.00[ASN][1000 genomes]
rs62023188	1.00[ASN][1000 genomes]
rs62023189	1.00[ASN][1000 genomes]
rs6493403	1.00[ASN][1000 genomes]
rs6493418	0.85[AMR][1000 genomes]
rs71469679	1.00[ASN][1000 genomes]
rs71469681	1.00[ASN][1000 genomes]
rs7163792	1.00[ASN][1000 genomes]
rs7170583	0.88[EUR][1000 genomes]
rs7171600	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs8032032	0.88[EUR][1000 genomes]
rs8034200	1.00[ASN][1000 genomes]
rs9707844	1.00[ASN][1000 genomes]
rs9920455	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044277	chr15:49921547-50702386	Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv542380	chr15:49921547-50702386	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv1035983	chr15:50223334-50595170	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv542382	chr15:50223334-50595170	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
5	nsv904209	chr15:50444824-50482133	Enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:50461600-50472400	Weak transcription	Hela-S3	cervix

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