Variant report

Variant	rs28627182
Chromosome Location	chr12:118224849-118224850
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10850900	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10850902	0.87[EUR][1000 genomes]
rs10850904	0.81[EUR][1000 genomes]
rs4766876	0.85[EUR][1000 genomes]
rs4767627	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4767628	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs895472	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv560387	chr12:118219415-118239673	Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Weak transcription Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:118210000-118230800	Weak transcription	Pancreas	Pancrea
2	chr12:118224400-118227600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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