Variant report

Variant	rs28627379
Chromosome Location	chr9:95604705-95604706
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs57248419	1.00[EUR][1000 genomes]
rs60023125	1.00[EUR][1000 genomes]
rs7036069	1.00[EUR][1000 genomes]
rs73522576	1.00[EUR][1000 genomes]
rs73524291	1.00[EUR][1000 genomes]
rs73526840	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831654	chr9:95542920-95720961	ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv893574	chr9:95580376-95688099	Active TSS Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv525363	chr9:95598200-95605067	ZNF genes & repeats Weak transcription Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95598000-95616800	ZNF genes & repeats	Liver	Liver
2	chr9:95599800-95608400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr9:95600000-95608400	Weak transcription	Placenta	Placenta
4	chr9:95600000-95610000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr9:95601000-95605800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr9:95603000-95607800	Weak transcription	NH-A	brain
7	chr9:95603200-95608000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr9:95603400-95616200	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr9:95603600-95609000	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr9:95604400-95608400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr9:95604600-95607600	Weak transcription	Muscle Satellite Cultured Cells	--

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links