Variant report

Variant	rs2863202
Chromosome Location	chr1:67584335-67584336
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10732838	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10749772	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10889656	0.94[CEU][hapmap];0.81[CHD][hapmap];0.88[MEX][hapmap];0.90[TSI][hapmap];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11208997	0.86[TSI][hapmap]
rs11209000	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11209002	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11806560	1.00[CHB][hapmap]
rs17129650	1.00[CHB][hapmap]
rs1885276	0.90[TSI][hapmap]
rs1885279	1.00[CHB][hapmap]
rs1885280	1.00[CHB][hapmap]
rs3762320	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4655520	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6588240	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6687611	0.80[CEU][hapmap];0.86[TSI][hapmap]
rs6701962	0.86[TSI][hapmap]
rs7517744	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7528804	0.83[TSI][hapmap]
rs7531589	0.86[TSI][hapmap]
rs7535494	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461751	chr1:67479598-67689036	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv546445	chr1:67479598-67689036	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv461762	chr1:67551209-67648460	Enhancers Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv546446	chr1:67551209-67648460	Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv870950	chr1:67575549-67627260	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2863202	SLC35D1	cis	parietal	SCAN

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:67583400-67584800	Enhancers	Primary T cells from cord blood	blood
2	chr1:67583600-67584600	Enhancers	HSMM	muscle
3	chr1:67584000-67584400	Enhancers	Muscle Satellite Cultured Cells	--
4	chr1:67584000-67584400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr1:67584000-67584600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr1:67584000-67584600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr1:67584000-67584600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
8	chr1:67584000-67584600	Enhancers	HSMMtube	muscle
9	chr1:67584000-67584800	Enhancers	Primary T helper cells PMA-I stimulated	--
10	chr1:67584000-67584800	Enhancers	Fetal Thymus	thymus
11	chr1:67584200-67584800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
12	chr1:67584200-67584800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr1:67584200-67584800	Enhancers	Thymus	Thymus

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