Variant report

Variant	rs28632107
Chromosome Location	chr4:92713159-92713160
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs28419177	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55971057	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73837013	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869023	chr4:91940838-92935383	Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv594861	chr4:92379081-92898309	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv948428	chr4:92382683-93161851	Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv594862	chr4:92392152-93222515	Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	nsv461585	chr4:92395356-92761582	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv594863	chr4:92395356-92761582	Weak transcription Transcr. at gene 5' and 3' Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv999961	chr4:92396538-93213898	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
8	nsv537178	chr4:92396538-93213898	Enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Genic enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
9	nsv533406	chr4:92396539-93184304	ZNF genes & repeats Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
10	nsv530154	chr4:92396539-93359983	Enhancers Transcr. at gene 5' and 3' Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
11	nsv1006366	chr4:92481747-92755677	Enhancers Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	nsv1003269	chr4:92488825-92758977	Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Weak transcription Genic enhancers Transcr. at gene 5' and 3' Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
13	nsv869490	chr4:92506402-93219336	Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
14	nsv999701	chr4:92518040-93233556	Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
15	nsv537180	chr4:92518040-93233556	Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
16	nsv530442	chr4:92528849-93184304	Enhancers Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
17	nsv508299	chr4:92651441-92723329	Active TSS Genic enhancers Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
18	nsv1011299	chr4:92678001-92836545	Enhancers ZNF genes & repeats Active TSS Weak transcription Strong transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:92712400-92713200	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr4:92712600-92713200	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr4:92712600-92713200	Active TSS	H9 Cell Line	embryonic stem cell
4	chr4:92712600-92713200	Active TSS	iPS-15b Cell Line	embryonic stem cell
5	chr4:92712600-92713200	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr4:92712600-92713200	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr4:92712600-92713200	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr4:92712600-92713200	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr4:92712600-92713200	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr4:92712600-92713200	Active TSS	Liver	Liver
11	chr4:92712600-92713200	Active TSS	Brain Germinal Matrix	brain
12	chr4:92712600-92713200	Active TSS	Fetal Adrenal Gland	Adrenal Gland
13	chr4:92712600-92713200	Active TSS	Fetal Stomach	stomach
14	chr4:92712600-92713200	Active TSS	Pancreas	Pancrea
15	chr4:92712600-92713400	Active TSS	HUES6 Cell Line	embryonic stem cell
16	chr4:92712600-92713400	Active TSS	HUES64 Cell Line	embryonic stem cell
17	chr4:92712600-92713400	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr4:92712600-92713400	Active TSS	Fetal Brain Female	brain
19	chr4:92712800-92713200	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr4:92712800-92713200	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr4:92712800-92713200	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr4:92712800-92713200	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr4:92712800-92713200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr4:92712800-92713200	Active TSS	iPS-18 Cell Line	embryonic stem cell
25	chr4:92712800-92713200	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
26	chr4:92712800-92713200	Active TSS	Cortex derived primary cultured neurospheres	brain
27	chr4:92712800-92713200	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr4:92712800-92713200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
29	chr4:92712800-92713200	Active TSS	Colonic Mucosa	Colon
30	chr4:92712800-92713200	Active TSS	Fetal Intestine Large	intestine
31	chr4:92712800-92713200	Active TSS	Fetal Intestine Small	intestine
32	chr4:92712800-92713200	Active TSS	Pancreatic Islets	Pancreatic Islet
33	chr4:92712800-92713200	Active TSS	Rectal Mucosa Donor 29	rectum
34	chr4:92712800-92713200	Active TSS	Rectal Mucosa Donor 31	rectum
35	chr4:92712800-92713200	Active TSS	HepG2	liver
36	chr4:92712800-92713400	Active TSS	ES-I3 Cell Line	embryonic stem cell
37	chr4:92712800-92713400	Active TSS	HUES48 Cell Line	embryonic stem cell
38	chr4:92712800-92713400	Active TSS	iPS-20b Cell Line	embryonic stem cell
39	chr4:92712800-92713400	Active TSS	Fetal Kidney	kidney
40	chr4:92712800-92713400	Active TSS	HMEC	breast
41	chr4:92713000-92713200	Flanking Active TSS	H1 Cell Line	embryonic stem cell
42	chr4:92713000-92713200	Flanking Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr4:92713000-92713400	Active TSS	ES-WA7 Cell Line	embryonic stem cell

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