Variant report

Variant	rs28633958
Chromosome Location	chr4:166850200-166850201
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10030523	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10050131	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28375440	1.00[AMR][1000 genomes]
rs28583095	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28594887	0.86[AFR][1000 genomes]
rs28602324	1.00[AMR][1000 genomes]
rs28607794	1.00[AMR][1000 genomes]
rs28816187	1.00[AMR][1000 genomes]
rs28830841	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72982290	1.00[AMR][1000 genomes]
rs7356239	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7699143	1.00[AMR][1000 genomes]
rs9308119	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9985659	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9985705	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9995426	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3490569	chr4:166680129-166981346	Enhancers Bivalent/Poised TSS Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv3490570	chr4:166680129-166981346	Enhancers Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv821638	chr4:166837633-167262625	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:166847800-166853200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr4:166849000-166850400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr4:166849000-166850400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr4:166849400-166850400	Enhancers	HMEC	breast
5	chr4:166849800-166853000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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