Variant report

Variant	rs28634036
Chromosome Location	chr4:120014777-120014778
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:120001166..120004043-chr4:120014693..120016511,3	MCF-7	breast:
2	chr4:120014220..120018464-chr4:120020403..120024000,3	MCF-7	breast:
3	chr4:120013479..120014990-chr4:120129629..120131701,2	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs28451026	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28589969	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916641	chr4:119780023-120777320	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
2	nsv948802	chr4:119844269-120208926	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
3	nsv1007214	chr4:120007913-120112460	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1008115	chr4:120007913-120143849	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
5	nsv1003827	chr4:120008227-120112460	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv522386	chr4:120009147-120115379	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv1012868	chr4:120014630-120464880	Enhancers Flanking Active TSS Active TSS Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
8	nsv537232	chr4:120014630-120464880	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:120009000-120017600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr4:120009200-120019000	Weak transcription	Fetal Intestine Large	intestine
3	chr4:120013000-120015400	Enhancers	Stomach Mucosa	stomach
4	chr4:120013200-120015200	Enhancers	HepG2	liver
5	chr4:120014000-120015000	Enhancers	Pancreas	Pancrea
6	chr4:120014200-120015000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr4:120014200-120016000	Enhancers	HUVEC	blood vessel
8	chr4:120014400-120014800	Weak transcription	Left Ventricle	heart
9	chr4:120014400-120014800	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
10	chr4:120014400-120014800	Enhancers	NHEK	skin
11	chr4:120014400-120015000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr4:120014400-120015000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr4:120014400-120015000	Enhancers	Muscle Satellite Cultured Cells	--
14	chr4:120014400-120015000	Enhancers	Colonic Mucosa	Colon
15	chr4:120014400-120015000	Enhancers	Sigmoid Colon	Sigmoid Colon
16	chr4:120014400-120015000	Enhancers	HSMM	muscle
17	chr4:120014400-120015000	Enhancers	NH-A	brain
18	chr4:120014400-120015000	Enhancers	Osteobl	bone
19	chr4:120014400-120015200	Enhancers	ES-I3 Cell Line	embryonic stem cell
20	chr4:120014400-120015200	Flanking Active TSS	A549	lung
21	chr4:120014400-120015600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr4:120014600-120014800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr4:120014600-120015000	Enhancers	Right Atrium	heart
24	chr4:120014600-120015400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr4:120014600-120015600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr4:120014600-120015600	Enhancers	Rectal Mucosa Donor 29	rectum
27	chr4:120014600-120015800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links