Variant report
| Variant | rs28634547 |
|---|---|
| Chromosome Location | chr4:121273627-121273628 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr4:23802609..23803478-chr4:121273037..121273864,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:28)
| rs_ID | r2[population] |
|---|---|
| rs10010642 | 0.84[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs10021530 | 0.95[AFR][1000 genomes] |
| rs10022592 | 0.98[AFR][1000 genomes] |
| rs10023116 | 0.99[AFR][1000 genomes] |
| rs10023672 | 0.98[AFR][1000 genomes] |
| rs10029180 | 0.83[EUR][1000 genomes] |
| rs10518355 | 0.81[EUR][1000 genomes] |
| rs11929752 | 0.99[AFR][1000 genomes] |
| rs13434556 | 0.96[EUR][1000 genomes] |
| rs1526324 | 0.87[EUR][1000 genomes] |
| rs1554730 | 0.98[EUR][1000 genomes] |
| rs17013174 | 0.99[AFR][1000 genomes] |
| rs17013180 | 0.99[AFR][1000 genomes] |
| rs17315319 | 0.89[EUR][1000 genomes] |
| rs28446046 | 0.83[EUR][1000 genomes] |
| rs28503893 | 0.96[EUR][1000 genomes] |
| rs28560329 | 0.91[AFR][1000 genomes] |
| rs28579774 | 0.99[AFR][1000 genomes] |
| rs28624642 | 0.82[EUR][1000 genomes] |
| rs28749277 | 0.83[EUR][1000 genomes] |
| rs60902025 | 0.98[AFR][1000 genomes] |
| rs6534179 | 0.84[EUR][1000 genomes] |
| rs6812575 | 0.92[AFR][1000 genomes] |
| rs6856851 | 0.96[EUR][1000 genomes] |
| rs6856905 | 0.96[EUR][1000 genomes] |
| rs7683870 | 0.99[AFR][1000 genomes] |
| rs9990802 | 0.99[AFR][1000 genomes] |
| rs9991289 | 0.95[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1007641 | chr4:120884220-121555889 | Strong transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 24 gene(s) | inside rSNPs | diseases |
| 2 | nsv537234 | chr4:120884220-121555889 | Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 24 gene(s) | inside rSNPs | diseases |
| 3 | nsv595333 | chr4:121093248-121440368 | Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 4 | nsv1005240 | chr4:121093285-121420997 | Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 5 | nsv879852 | chr4:121108734-121768496 | Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:121270200-121275200 | Weak transcription | Bone Marrow Derived Cultured Mesenchymal Stem Cells | Bone marrow |
