Variant report

Variant	rs28635617
Chromosome Location	chr4:79717308-79717309
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:79655479..79657150-chr4:79715165..79717948,2	K562	blood:
2	chr4:79715007..79717955-chr4:79723142..79725042,2	K562	blood:
3	chr4:79498073..79500124-chr4:79717103..79719533,2	K562	blood:
4	chr4:79550103..79553175-chr4:79717288..79720915,3	K562	blood:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10212806	0.92[AFR][1000 genomes]
rs1816184	0.94[AFR][1000 genomes]
rs28501992	0.91[AFR][1000 genomes]
rs28601752	0.91[AFR][1000 genomes]
rs7658187	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1792021	chr4:79661618-79784245	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1011365	chr4:79714695-79779723	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region miRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:79699400-79722600	Weak transcription	Fetal Thymus	thymus
2	chr4:79700200-79732800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr4:79700400-79718200	Weak transcription	Duodenum Mucosa	Duodenum
4	chr4:79701600-79719200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr4:79702000-79731200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr4:79703000-79720800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr4:79703200-79720800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr4:79703400-79720800	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr4:79705600-79731200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr4:79706000-79720000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr4:79706000-79720200	Weak transcription	Primary T cells from cord blood	blood
12	chr4:79706000-79720200	Weak transcription	NHEK	skin
13	chr4:79706000-79720800	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr4:79706200-79718000	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr4:79706200-79718200	Weak transcription	Fetal Lung	lung
16	chr4:79706200-79722200	Weak transcription	HSMM	muscle
17	chr4:79706600-79722800	Weak transcription	Brain Substantia Nigra	brain
18	chr4:79707000-79721000	Weak transcription	HUES48 Cell Line	embryonic stem cell
19	chr4:79707600-79721800	Weak transcription	Fetal Muscle Leg	muscle
20	chr4:79707800-79720800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr4:79707800-79720800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr4:79708200-79719000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr4:79708800-79719000	Weak transcription	Right Atrium	heart
24	chr4:79709000-79720800	Weak transcription	NHLF	lung
25	chr4:79709200-79723800	Weak transcription	Cortex derived primary cultured neurospheres	brain
26	chr4:79709200-79731200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr4:79709400-79718200	Weak transcription	HUES64 Cell Line	embryonic stem cell
28	chr4:79709400-79724000	Weak transcription	Fetal Intestine Small	intestine
29	chr4:79709600-79718400	Weak transcription	Fetal Heart	heart
30	chr4:79709600-79720600	Weak transcription	Osteobl	bone
31	chr4:79709600-79721400	Weak transcription	Brain Anterior Caudate	brain
32	chr4:79710000-79720200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr4:79710000-79720600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr4:79710400-79725200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr4:79711000-79720800	Weak transcription	HUES6 Cell Line	embryonic stem cell
36	chr4:79712800-79717800	Weak transcription	Primary hematopoietic stem cells	blood
37	chr4:79713600-79717600	Weak transcription	Primary monocytes fromperipheralblood	blood
38	chr4:79713600-79717600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr4:79714000-79717800	Weak transcription	Monocytes-CD14+_RO01746	blood
40	chr4:79714400-79748400	Weak transcription	Aorta	Aorta
41	chr4:79715400-79730400	Weak transcription	Left Ventricle	heart
42	chr4:79716400-79720800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr4:79716600-79717600	Weak transcription	Primary B cells from peripheral blood	blood
44	chr4:79716600-79717800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr4:79716600-79717800	Weak transcription	NHDF-Ad	bronchial
46	chr4:79716600-79718200	Weak transcription	Dnd41	blood
47	chr4:79716600-79719000	Weak transcription	K562	blood
48	chr4:79716600-79721200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr4:79716600-79726200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr4:79716600-79726800	Weak transcription	Fetal Intestine Large	intestine

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