Variant report

Variant	rs28638438
Chromosome Location	chr18:45011845-45011846
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs55881359	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56207056	0.84[AFR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57771146	0.84[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs58556444	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60530780	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61263060	0.84[AFR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62095734	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62097082	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62097121	0.83[EUR][1000 genomes]
rs6507738	0.84[AFR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8095582	0.84[AFR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs892578	1.00[ASN][1000 genomes]
rs9956704	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9963812	0.90[EUR][1000 genomes]
rs9964645	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833641	chr18:44815063-45020202	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:45009800-45012200	Enhancers	Left Ventricle	heart
2	chr18:45011800-45014400	Weak transcription	Right Atrium	heart

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links