Variant report

Variant	rs28641049
Chromosome Location	chr7:66813322-66813323
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10237064	0.87[EUR][1000 genomes]
rs10280504	0.89[AFR][1000 genomes]
rs13438645	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2075082	0.90[AFR][1000 genomes]
rs2277020	0.89[EUR][1000 genomes]
rs2277022	0.89[EUR][1000 genomes]
rs28505940	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28627817	0.88[EUR][1000 genomes]
rs6967566	0.86[EUR][1000 genomes]
rs7357162	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7788598	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7789977	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758118	chr7:66401430-66859253	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	esv2759535	chr7:66401430-66859253	Weak transcription Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
3	nsv888330	chr7:66502171-66877880	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	39 gene(s)	inside rSNPs	diseases
4	nsv1027702	chr7:66722103-66841913	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
5	nsv1031048	chr7:66722103-66844039	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
6	nsv966839	chr7:66805198-66815088	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv1031560	chr7:66805244-66846663	Enhancers Strong transcription Bivalent Enhancer Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv1022779	chr7:66805244-66849392	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	nsv970413	chr7:66808251-66815088	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
10	nsv1031147	chr7:66811313-66922350	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:66785800-66816200	Weak transcription	Primary T helper cells fromperipheralblood	blood
2	chr7:66802800-66814800	Weak transcription	HSMMtube	muscle
3	chr7:66805200-66816200	Weak transcription	Primary T helper cells PMA-I stimulated	--
4	chr7:66806200-66813400	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr7:66807200-66819600	Weak transcription	Brain Anterior Caudate	brain
6	chr7:66807200-66822400	Weak transcription	Brain Hippocampus Middle	brain
7	chr7:66808400-66816200	Weak transcription	Thymus	Thymus
8	chr7:66808400-66822200	Weak transcription	Right Ventricle	heart
9	chr7:66808800-66815600	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr7:66809800-66815000	Genic enhancers	Skeletal Muscle Male	skeletal muscle
11	chr7:66809800-66816000	Weak transcription	Dnd41	blood
12	chr7:66809800-66822600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr7:66809800-66822800	Weak transcription	Brain Cingulate Gyrus	brain
14	chr7:66810000-66816400	Weak transcription	Colon Smooth Muscle	Colon
15	chr7:66810000-66820800	Weak transcription	Primary B cells from peripheral blood	blood
16	chr7:66810000-66822200	Weak transcription	Aorta	Aorta
17	chr7:66810000-66822200	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr7:66810200-66816800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr7:66810200-66821400	Weak transcription	Ovary	ovary
20	chr7:66810200-66821600	Weak transcription	Adipose Nuclei	Adipose
21	chr7:66810200-66821800	Weak transcription	Liver	Liver
22	chr7:66810200-66822000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr7:66810200-66822200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
24	chr7:66810200-66822800	Weak transcription	Brain Angular Gyrus	brain
25	chr7:66810200-66830400	Weak transcription	Brain Inferior Temporal Lobe	brain
26	chr7:66810400-66813600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr7:66810400-66815000	Weak transcription	Cortex derived primary cultured neurospheres	brain
28	chr7:66810400-66815800	Weak transcription	Placenta	Placenta
29	chr7:66810400-66819800	Weak transcription	Primary T cells from cord blood	blood
30	chr7:66810600-66813600	Strong transcription	Fetal Stomach	stomach
31	chr7:66810600-66821000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr7:66811200-66818000	Weak transcription	Left Ventricle	heart
33	chr7:66811200-66822000	Weak transcription	Duodenum Mucosa	Duodenum
34	chr7:66811200-66822000	Weak transcription	Duodenum Smooth Muscle	Duodenum
35	chr7:66811600-66822800	Weak transcription	Brain Substantia Nigra	brain
36	chr7:66811600-66826000	Weak transcription	Psoas Muscle	Psoas
37	chr7:66812400-66813400	Weak transcription	Skeletal Muscle Female	skeletal muscle
38	chr7:66813000-66815200	Strong transcription	Fetal Muscle Leg	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links