Variant report

Variant	rs28641714
Chromosome Location	chr15:78494888-78494889
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12102165	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28410818	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28463338	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59369494	0.93[AFR][1000 genomes]
rs60280956	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529491	chr15:77932659-78751516	Genic enhancers Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
2	nsv948437	chr15:78435527-78504662	Strong transcription Bivalent Enhancer Weak transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv904430	chr15:78466127-78507316	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv917303	chr15:78491050-79205255	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	122 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:78487600-78495400	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr15:78487600-78495400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr15:78487600-78495600	Weak transcription	Right Atrium	heart
4	chr15:78488400-78497000	Weak transcription	Spleen	Spleen
5	chr15:78492800-78500200	Enhancers	Fetal Muscle Leg	muscle
6	chr15:78493200-78495400	Weak transcription	Fetal Intestine Small	intestine
7	chr15:78493200-78495400	Weak transcription	Pancreas	Pancrea
8	chr15:78493400-78495400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr15:78493400-78496000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr15:78493800-78504200	Enhancers	Brain Substantia Nigra	brain
11	chr15:78494000-78495000	Weak transcription	Brain Cingulate Gyrus	brain
12	chr15:78494200-78495000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr15:78494200-78495200	Weak transcription	Right Ventricle	heart
14	chr15:78494200-78508800	Enhancers	Brain Inferior Temporal Lobe	brain
15	chr15:78494200-78509800	Enhancers	Skeletal Muscle Female	skeletal muscle
16	chr15:78494600-78495000	Weak transcription	Brain Anterior Caudate	brain
17	chr15:78494800-78508800	Enhancers	Brain Hippocampus Middle	brain
18	chr15:78494800-78509800	Enhancers	Skeletal Muscle Male	skeletal muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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