Variant report

Variant	rs28642741
Chromosome Location	chr14:80011704-80011705
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10133939	0.83[AMR][1000 genomes]
rs10134623	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10137124	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs10138114	0.83[AMR][1000 genomes]
rs10483925	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28484682	0.83[AMR][1000 genomes]
rs28508569	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28542680	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28553991	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28645851	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57498760	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60042400	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7145924	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7155119	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7155392	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7158122	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73324255	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73324300	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9805929	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045241	chr14:79885361-80734201	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1039622	chr14:79908702-80266601	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv902112	chr14:79939393-80050771	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv869542	chr14:80009619-80118315	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:80008400-80013000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr14:80008800-80011800	Enhancers	Stomach Smooth Muscle	stomach
3	chr14:80008800-80012000	Enhancers	Osteobl	bone
4	chr14:80009400-80012000	Enhancers	Rectal Smooth Muscle	rectum
5	chr14:80009600-80011800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr14:80009600-80018000	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr14:80010000-80012000	Enhancers	NH-A	brain
8	chr14:80010200-80012800	Weak transcription	Pancreas	Pancrea
9	chr14:80010400-80015800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr14:80010400-80018000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr14:80010600-80011800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr14:80010800-80011800	Enhancers	Muscle Satellite Cultured Cells	--
13	chr14:80010800-80014000	Weak transcription	Aorta	Aorta
14	chr14:80010800-80019000	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr14:80011000-80018800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr14:80011200-80013400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr14:80011400-80013400	Weak transcription	Duodenum Smooth Muscle	Duodenum
18	chr14:80011600-80015800	Weak transcription	Placenta Amnion	Placenta Amnion

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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