Variant report

Variant	rs28644432
Chromosome Location	chr4:7869773-7869774
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs11932843	0.81[ASN][1000 genomes]
rs13115701	0.81[ASN][1000 genomes]
rs13131154	0.81[ASN][1000 genomes]
rs13137140	0.81[ASN][1000 genomes]
rs13140004	0.81[ASN][1000 genomes]
rs13145572	0.81[ASN][1000 genomes]
rs13146302	0.81[ASN][1000 genomes]
rs1320073	0.81[ASN][1000 genomes]
rs17770147	0.81[ASN][1000 genomes]
rs17770177	0.81[ASN][1000 genomes]
rs28376459	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28394221	0.81[ASN][1000 genomes]
rs28488140	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28504337	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28539821	0.81[ASN][1000 genomes]
rs28546404	0.81[ASN][1000 genomes]
rs28605531	0.81[ASN][1000 genomes]
rs28673208	0.81[ASN][1000 genomes]
rs28688265	0.81[ASN][1000 genomes]
rs28699608	0.82[EUR][1000 genomes]
rs28738908	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28754920	0.81[ASN][1000 genomes]
rs34075381	0.81[ASN][1000 genomes]
rs34092549	0.81[ASN][1000 genomes]
rs34121576	0.81[ASN][1000 genomes]
rs34181918	0.81[ASN][1000 genomes]
rs34189407	0.81[ASN][1000 genomes]
rs34221000	0.81[ASN][1000 genomes]
rs34383852	0.81[ASN][1000 genomes]
rs34392913	0.81[ASN][1000 genomes]
rs34570748	0.82[ASN][1000 genomes]
rs34652148	0.81[ASN][1000 genomes]
rs34712341	0.81[ASN][1000 genomes]
rs34868842	0.81[ASN][1000 genomes]
rs35138920	0.81[ASN][1000 genomes]
rs35152796	0.81[ASN][1000 genomes]
rs35154266	0.81[ASN][1000 genomes]
rs35238070	0.81[ASN][1000 genomes]
rs35349192	0.81[ASN][1000 genomes]
rs35502845	0.81[ASN][1000 genomes]
rs35727635	0.81[ASN][1000 genomes]
rs35735994	0.81[ASN][1000 genomes]
rs35905776	0.81[ASN][1000 genomes]
rs35967175	0.81[ASN][1000 genomes]
rs36013696	0.81[ASN][1000 genomes]
rs36106793	0.81[ASN][1000 genomes]
rs4487321	0.81[ASN][1000 genomes]
rs4696742	0.81[ASN][1000 genomes]
rs4696762	0.81[ASN][1000 genomes]
rs61292547	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6824266	0.81[ASN][1000 genomes]
rs6828574	0.81[ASN][1000 genomes]
rs6829505	0.81[ASN][1000 genomes]
rs6832352	0.81[ASN][1000 genomes]
rs6833054	0.81[ASN][1000 genomes]
rs6837845	0.81[ASN][1000 genomes]
rs6838055	0.81[ASN][1000 genomes]
rs6845014	0.81[ASN][1000 genomes]
rs6855982	0.81[ASN][1000 genomes]
rs71601887	0.81[ASN][1000 genomes]
rs71601888	0.81[ASN][1000 genomes]
rs71601889	0.81[ASN][1000 genomes]
rs71601890	0.81[ASN][1000 genomes]
rs71601892	0.81[ASN][1000 genomes]
rs7441783	0.81[EUR][1000 genomes]
rs7660568	0.81[ASN][1000 genomes]
rs7691386	0.81[ASN][1000 genomes]
rs7697255	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491712	chr4:7582506-8155069	Enhancers Bivalent Enhancer Genic enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	esv34140	chr4:7787936-8172491	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
3	esv2754386	chr4:7822449-7992909	Weak transcription Enhancers Active TSS Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	esv2756298	chr4:7822449-7992909	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv878578	chr4:7841833-7969594	Enhancers Flanking Active TSS Genic enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:7848000-7872200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr4:7852600-7873600	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr4:7856200-7872800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr4:7857600-7873000	Weak transcription	Colonic Mucosa	Colon
5	chr4:7857800-7896400	Weak transcription	Spleen	Spleen
6	chr4:7859800-7872600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr4:7860400-7870200	Weak transcription	Primary T helper cells fromperipheralblood	blood
8	chr4:7860800-7872800	Weak transcription	Right Ventricle	heart
9	chr4:7861200-7872800	Weak transcription	Psoas Muscle	Psoas
10	chr4:7862600-7870000	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr4:7863600-7871000	Weak transcription	Rectal Smooth Muscle	rectum
12	chr4:7863800-7872800	Weak transcription	Brain Hippocampus Middle	brain
13	chr4:7864800-7873000	Weak transcription	Primary T cells from cord blood	blood
14	chr4:7865200-7872200	Weak transcription	Right Atrium	heart
15	chr4:7865400-7872600	Weak transcription	Fetal Heart	heart
16	chr4:7865400-7875800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr4:7865800-7870000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr4:7865800-7871400	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr4:7865800-7872000	Weak transcription	Skeletal Muscle Female	skeletal muscle
20	chr4:7865800-7872800	Strong transcription	Fetal Stomach	stomach
21	chr4:7866000-7870800	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr4:7866000-7872000	Weak transcription	Gastric	stomach
23	chr4:7866000-7872600	Weak transcription	Fetal Brain Male	brain
24	chr4:7866000-7872800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr4:7866000-7872800	Weak transcription	Brain Angular Gyrus	brain
26	chr4:7866000-7872800	Weak transcription	Brain Cingulate Gyrus	brain
27	chr4:7866000-7872800	Weak transcription	Brain Inferior Temporal Lobe	brain
28	chr4:7866000-7872800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
29	chr4:7866000-7872800	Weak transcription	Brain Substantia Nigra	brain
30	chr4:7866000-7873000	Weak transcription	H1 Cell Line	embryonic stem cell
31	chr4:7866000-7873000	Weak transcription	H9 Cell Line	embryonic stem cell
32	chr4:7866000-7873000	Weak transcription	Pancreas	Pancrea
33	chr4:7866000-7874000	Weak transcription	Fetal Kidney	kidney
34	chr4:7866000-7875200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr4:7866000-7875400	Weak transcription	Stomach Mucosa	stomach
36	chr4:7866000-7877600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
37	chr4:7866000-7877800	Weak transcription	HepG2	liver
38	chr4:7866000-7882400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
39	chr4:7866000-7885600	Weak transcription	Esophagus	oesophagus
40	chr4:7866800-7873600	Strong transcription	Cortex derived primary cultured neurospheres	brain
41	chr4:7867000-7870000	Strong transcription	HUES64 Cell Line	embryonic stem cell
42	chr4:7867000-7870200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr4:7867200-7870400	Strong transcription	Fetal Lung	lung
44	chr4:7867200-7870600	Strong transcription	Fetal Intestine Large	intestine
45	chr4:7867200-7871800	Strong transcription	Rectal Mucosa Donor 31	rectum
46	chr4:7867200-7872800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
47	chr4:7867200-7873600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
48	chr4:7867400-7873000	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr4:7867400-7873000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr4:7867400-7873000	Strong transcription	Fetal Intestine Small	intestine

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