Variant report

Variant	rs28647773
Chromosome Location	chr21:15902679-15902680
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr21:15900972..15903079-chr21:15904912..15907876,2	K562	blood:
2	chr21:15870384..15874520-chr21:15900850..15905377,4	K562	blood:
3	chr21:15901318..15902999-chr21:16086127..16088877,2	K562	blood:

Variant related genes	Relation type
ENSG00000155307	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs12482557	0.93[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs13048538	0.81[EUR][1000 genomes]
rs13048954	0.82[EUR][1000 genomes]
rs13052873	0.84[EUR][1000 genomes]
rs2064023	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2142312	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2822743	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2822753	0.96[ASN][1000 genomes]
rs2822755	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2822756	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2822757	0.89[EUR][1000 genomes]
rs2822758	0.88[AMR][1000 genomes]
rs2822759	0.91[EUR][1000 genomes]
rs2822764	0.83[EUR][1000 genomes]
rs2822766	0.84[EUR][1000 genomes]
rs36027342	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1059591	chr21:15835325-15969195	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1056423	chr21:15838309-15948474	Enhancers Flanking Active TSS Active TSS Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv544376	chr21:15855470-15948474	Weak transcription Active TSS Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1065823	chr21:15863224-15948474	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1057934	chr21:15863224-15969195	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv913406	chr21:15875108-15905580	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	esv1800015	chr21:15884475-15906590	Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv913408	chr21:15885274-15905580	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv913409	chr21:15885274-15908642	Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
10	nsv459097	chr21:15886919-15902978	Strong transcription Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv587045	chr21:15886919-15902978	Flanking Active TSS Enhancers Weak transcription Genic enhancers Transcr. at gene 5' and 3' Strong transcription Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	nsv459098	chr21:15886919-15906590	Enhancers Genic enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
13	nsv587046	chr21:15886919-15906590	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
14	nsv913410	chr21:15889553-15906590	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
15	nsv1058533	chr21:15896056-15948474	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
16	nsv544377	chr21:15896056-15948474	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
17	nsv587047	chr21:15896422-15906590	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
18	nsv834045	chr21:15900678-16112850	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:15853400-15905400	Weak transcription	HUVEC	blood vessel
2	chr21:15896200-15904200	Weak transcription	Primary hematopoietic stem cells	blood
3	chr21:15896200-15906200	Weak transcription	Fetal Thymus	thymus
4	chr21:15899800-15906000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr21:15900000-15904200	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr21:15900000-15905200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr21:15900000-15906000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr21:15900000-15906000	Weak transcription	Duodenum Mucosa	Duodenum
9	chr21:15900600-15904000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
10	chr21:15900800-15904400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr21:15901000-15902800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr21:15901000-15904400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr21:15901000-15906000	Weak transcription	Primary T cells from cord blood	blood
14	chr21:15901200-15904200	Enhancers	Dnd41	blood
15	chr21:15901200-15905800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr21:15901200-15905800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr21:15901400-15904200	Enhancers	Primary T helper cells PMA-I stimulated	--
18	chr21:15901400-15904200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr21:15901600-15904200	Weak transcription	Primary T cells fromperipheralblood	blood
20	chr21:15901600-15904200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
21	chr21:15901600-15904400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
22	chr21:15901800-15902800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
23	chr21:15901800-15902800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
24	chr21:15901800-15904200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
25	chr21:15901800-15904400	Weak transcription	Primary B cells from peripheral blood	blood
26	chr21:15902000-15902800	Weak transcription	Primary neutrophils fromperipheralblood	blood
27	chr21:15902000-15903800	Weak transcription	Primary T helper cells fromperipheralblood	blood
28	chr21:15902200-15903000	Weak transcription	K562	blood
29	chr21:15902200-15903600	Weak transcription	Monocytes-CD14+_RO01746	blood
30	chr21:15902600-15903200	Enhancers	Primary monocytes fromperipheralblood	blood
31	chr21:15902600-15906600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood

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