Variant report

Variant	rs28649245
Chromosome Location	chr15:73158480-73158481
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs28413514	1.00[AMR][1000 genomes]
rs28451211	1.00[AMR][1000 genomes]
rs28451625	1.00[AMR][1000 genomes]
rs28516420	1.00[AMR][1000 genomes]
rs28567078	1.00[AMR][1000 genomes]
rs28734818	1.00[AMR][1000 genomes]
rs74021506	1.00[AMR][1000 genomes]
rs74024328	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482512	chr15:73023099-73175952	Flanking Active TSS Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73155000-73159000	Weak transcription	Aorta	Aorta
2	chr15:73157200-73158600	Enhancers	Fetal Intestine Small	intestine
3	chr15:73157200-73159400	Enhancers	Esophagus	oesophagus
4	chr15:73157400-73158600	Enhancers	Fetal Intestine Large	intestine
5	chr15:73158000-73159400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr15:73158000-73159400	Enhancers	Hela-S3	cervix
7	chr15:73158000-73161400	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr15:73158200-73159400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr15:73158200-73161600	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr15:73158400-73158600	Bivalent Enhancer	A549	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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