Variant report

Variant	rs28651612
Chromosome Location	chr4:99161548-99161549
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:99157632..99160467-chr4:99160653..99163373,3	K562	blood:

Extended variants
information (count: 107 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:94)

rs_ID	r²[population]
rs10001137	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10003061	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10003496	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10006734	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10010260	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10013248	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10015953	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10017075	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10017827	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10022073	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10025311	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10026222	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10027925	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10029895	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10032785	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10034649	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10050289	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10212883	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1024127	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10470953	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12331722	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13353633	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs16996571	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17027340	1.00[EUR][1000 genomes]
rs17027388	0.95[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs17027393	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17027526	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17027538	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17027559	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17027596	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17027597	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs28373747	0.87[EUR][1000 genomes]
rs28438716	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs28446845	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs28451188	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs28455818	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs28459325	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs28464398	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs28472340	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs28478192	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28494643	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs28503871	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs28529663	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs28558542	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs28564255	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs28589745	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs28647503	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28664868	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs28705201	0.92[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs28731135	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs28786730	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs28806635	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs28807427	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs28840158	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs28882140	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs28883979	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs28893208	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs41275691	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs41275693	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs41525749	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs55993060	1.00[EUR][1000 genomes]
rs56805018	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs58954707	0.89[EUR][1000 genomes]
rs59725407	1.00[AMR][1000 genomes]
rs60281573	1.00[EUR][1000 genomes]
rs60544326	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs60638903	1.00[EUR][1000 genomes]
rs61485715	1.00[EUR][1000 genomes]
rs6831386	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6834495	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6858042	1.00[AMR][1000 genomes]
rs73832142	1.00[EUR][1000 genomes]
rs73832145	1.00[EUR][1000 genomes]
rs73832149	1.00[EUR][1000 genomes]
rs73832156	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73834403	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73834404	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73834429	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73834444	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73834475	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73834479	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73834489	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7655622	0.91[AMR][1000 genomes]
rs7656868	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7658383	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7685754	0.89[EUR][1000 genomes]
rs9307226	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9991668	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9994467	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9995184	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9997337	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9997973	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9998801	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9999779	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529623	chr4:98501338-99460166	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	nsv1000956	chr4:98732458-99178588	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1001570	chr4:98976239-99239838	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	nsv879650	chr4:99057457-99172232	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv461595	chr4:99065480-99172175	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv594939	chr4:99065480-99172175	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv1004616	chr4:99085875-99308901	Genic enhancers Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
8	esv2763801	chr4:99094892-99413853	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
9	esv2754250	chr4:99094922-99527122	Strong transcription Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
10	nsv879651	chr4:99105055-99441349	Weak transcription Genic enhancers Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
11	nsv879652	chr4:99125659-99303633	Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
12	nsv528127	chr4:99146436-99229839	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
13	nsv879653	chr4:99152631-99260423	Enhancers Active TSS Flanking Active TSS Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:99153800-99163000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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