Variant report

Variant	rs28653026
Chromosome Location	chr10:5636728-5636729
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:5634973..5639659-chr10:5649443..5654538,7	MCF-7	breast:
2	chr10:5592839..5594625-chr10:5635555..5637681,2	MCF-7	breast:
3	chr10:5488551..5493324-chr10:5634966..5640778,7	K562	blood:
4	chr10:5614636..5617261-chr10:5635762..5637348,3	K562	blood:
5	chr10:5636705..5640848-chr10:5659114..5662313,5	MCF-7	breast:
6	chr10:5636158..5637670-chr10:5644195..5645810,2	K562	blood:

Variant related genes	Relation type
ENSG00000228951	Chromatin interaction
ENSG00000173848	Chromatin interaction
ENSG00000231483	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11253250	0.81[ASW][hapmap]
rs2380196	0.96[CEU][hapmap];0.80[GIH][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes]
rs2380197	0.90[EUR][1000 genomes]
rs4750500	0.86[CHB][hapmap];0.83[MEX][hapmap];0.82[ASN][1000 genomes]
rs4750514	0.86[CHB][hapmap];0.83[MEX][hapmap];0.82[ASN][1000 genomes]
rs4750519	0.86[CHB][hapmap];0.83[MEX][hapmap];0.82[ASN][1000 genomes]
rs7076013	0.86[CHB][hapmap];0.83[MEX][hapmap];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534685	chr10:4914018-5853324	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	68 gene(s)	inside rSNPs	diseases
2	nsv932104	chr10:5203626-5641023	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
3	nsv1054865	chr10:5225305-5638119	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
4	nsv831774	chr10:5463556-5657421	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
5	nsv894798	chr10:5503610-5670275	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
6	nsv523491	chr10:5542109-5720067	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
7	esv2757364	chr10:5557024-5720512	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
8	esv2759729	chr10:5557024-5804780	Flanking Active TSS Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:5627400-5639400	Enhancers	Fetal Muscle Leg	muscle
2	chr10:5632200-5636800	Weak transcription	Stomach Smooth Muscle	stomach
3	chr10:5632400-5637000	Weak transcription	K562	blood
4	chr10:5633800-5637000	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr10:5633800-5641600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr10:5634200-5638200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr10:5634800-5637400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr10:5634800-5651200	Weak transcription	Pancreas	Pancrea
9	chr10:5635600-5637600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr10:5636000-5636800	Enhancers	Primary B cells from peripheral blood	blood
11	chr10:5636000-5636800	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
12	chr10:5636000-5637800	Enhancers	Fetal Muscle Trunk	muscle
13	chr10:5636000-5638600	Enhancers	Fetal Thymus	thymus
14	chr10:5636000-5638800	Enhancers	Fetal Stomach	stomach
15	chr10:5636000-5639200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr10:5636000-5639800	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
17	chr10:5636200-5636800	Enhancers	Adipose Nuclei	Adipose
18	chr10:5636200-5636800	Enhancers	Lung	lung
19	chr10:5636200-5637000	Enhancers	Fetal Lung	lung
20	chr10:5636200-5637000	Enhancers	Osteobl	bone
21	chr10:5636200-5637200	Enhancers	Right Ventricle	heart
22	chr10:5636200-5637200	Enhancers	HMEC	breast
23	chr10:5636200-5637400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr10:5636200-5637400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr10:5636200-5637400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr10:5636200-5637600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr10:5636200-5637600	Enhancers	HUVEC	blood vessel
28	chr10:5636200-5637800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
29	chr10:5636200-5638000	Flanking Active TSS	NHDF-Ad	bronchial
30	chr10:5636200-5638200	Enhancers	Primary T cells from cord blood	blood
31	chr10:5636200-5638200	Enhancers	Hela-S3	cervix
32	chr10:5636200-5638600	Enhancers	Fetal Kidney	kidney
33	chr10:5636200-5639000	Enhancers	Skeletal Muscle Male	skeletal muscle
34	chr10:5636200-5639400	Enhancers	ES-I3 Cell Line	embryonic stem cell
35	chr10:5636200-5639800	Enhancers	Fetal Heart	heart
36	chr10:5636200-5639800	Enhancers	Placenta Amnion	Placenta Amnion
37	chr10:5636400-5636800	Enhancers	Left Ventricle	heart
38	chr10:5636400-5637000	Enhancers	Aorta	Aorta
39	chr10:5636400-5637200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr10:5636400-5637200	Enhancers	NH-A	brain
41	chr10:5636400-5637600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr10:5636400-5637600	Enhancers	A549	lung
43	chr10:5636400-5637800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr10:5636400-5637800	Enhancers	Primary T helper cells PMA-I stimulated	--
45	chr10:5636400-5638400	Bivalent Enhancer	HepG2	liver
46	chr10:5636400-5638800	Enhancers	HSMM	muscle
47	chr10:5636400-5639000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr10:5636400-5639600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr10:5636400-5639600	Enhancers	Esophagus	oesophagus
50	chr10:5636600-5636800	Bivalent Enhancer	ES-WA7 Cell Line	embryonic stem cell

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