Variant report

Variant	rs28653395
Chromosome Location	chr4:47224048-47224049
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs10025033	0.81[AFR][1000 genomes]
rs6818487	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829922	chr4:47093785-47261181	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv1009766	chr4:47155845-47277391	Enhancers Flanking Active TSS Weak transcription Active TSS	lncRNA	n/a	inside rSNPs	diseases
3	nsv998919	chr4:47207023-47476876	Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:47214600-47226600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr4:47223400-47224600	Enhancers	Placenta Amnion	Placenta Amnion
3	chr4:47223600-47224600	Enhancers	Fetal Heart	heart
4	chr4:47223600-47224800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr4:47223600-47225200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr4:47223600-47225200	Enhancers	Osteobl	bone
7	chr4:47223600-47225400	Enhancers	NH-A	brain
8	chr4:47223800-47224600	Enhancers	Muscle Satellite Cultured Cells	--
9	chr4:47223800-47224800	Enhancers	HMEC	breast
10	chr4:47223800-47225200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr4:47224000-47224600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr4:47224000-47224600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr4:47224000-47224600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr4:47224000-47224600	Enhancers	NHLF	lung
15	chr4:47224000-47224800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr4:47224000-47224800	Enhancers	Placenta	Placenta

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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