Variant report

Variant	rs28654254
Chromosome Location	chr18:45693427-45693428
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAX	chr18:45693240-45693567	NB4	blood:	n/a	chr18:45693264-45693274
2	MYC	chr18:45693245-45693503	NB4	blood:	n/a	chr18:45693264-45693274
3	REST	chr18:45693269-45693880	PFSK-1	brain:	n/a	n/a
4	POLR2A	chr18:45693258-45693919	PFSK-1	brain:	n/a	n/a
5	SPI1	chr18:45693391-45693847	HL-60	blood:	n/a	n/a

Variant related genes	Relation type
ZBTB7C	TF binding region

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs28576508	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv909616	chr18:45467806-45844500	Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:45688400-45699200	Enhancers	Spleen	Spleen
2	chr18:45688800-45694800	Enhancers	Fetal Muscle Leg	muscle
3	chr18:45688800-45695600	Enhancers	Placenta	Placenta
4	chr18:45688800-45696600	Enhancers	Fetal Intestine Small	intestine
5	chr18:45688800-45696800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chr18:45688800-45697000	Enhancers	Fetal Intestine Large	intestine
7	chr18:45688800-45697000	Enhancers	Ovary	ovary
8	chr18:45689000-45693600	Enhancers	Stomach Mucosa	stomach
9	chr18:45689000-45693800	Weak transcription	Brain Hippocampus Middle	brain
10	chr18:45689200-45695800	Enhancers	Duodenum Mucosa	Duodenum
11	chr18:45690200-45695800	Enhancers	Hela-S3	cervix
12	chr18:45691200-45694000	Enhancers	Primary B cells from cord blood	blood
13	chr18:45691200-45694200	Enhancers	Primary hematopoietic stem cells	blood
14	chr18:45691200-45694200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr18:45691200-45694600	Enhancers	Primary monocytes fromperipheralblood	blood
16	chr18:45691400-45694000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr18:45691400-45694600	Enhancers	Fetal Muscle Trunk	muscle
18	chr18:45691400-45694600	Enhancers	Right Atrium	heart
19	chr18:45691600-45694000	Enhancers	Colonic Mucosa	Colon
20	chr18:45691600-45694600	Enhancers	Lung	lung
21	chr18:45692200-45693600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr18:45692200-45693600	Weak transcription	Brain Anterior Caudate	brain
23	chr18:45692200-45693800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr18:45692400-45694000	Weak transcription	Fetal Kidney	kidney
25	chr18:45692600-45694600	Enhancers	Left Ventricle	heart
26	chr18:45692600-45695400	Enhancers	Liver	Liver
27	chr18:45692600-45695600	Enhancers	Breast Myoepithelial Primary Cells	Breast
28	chr18:45692800-45693800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
29	chr18:45692800-45693800	Enhancers	Rectal Mucosa Donor 29	rectum
30	chr18:45692800-45693800	Enhancers	Sigmoid Colon	Sigmoid Colon
31	chr18:45692800-45694600	Enhancers	Duodenum Smooth Muscle	Duodenum
32	chr18:45692800-45694600	Enhancers	Fetal Stomach	stomach
33	chr18:45692800-45694600	Enhancers	Right Ventricle	heart
34	chr18:45692800-45696000	Enhancers	Gastric	stomach
35	chr18:45693000-45693600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
36	chr18:45693000-45693800	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
37	chr18:45693000-45693800	Enhancers	Esophagus	oesophagus
38	chr18:45693000-45694600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr18:45693000-45694600	Enhancers	Pancreas	Pancrea
40	chr18:45693000-45694600	Enhancers	Skeletal Muscle Male	skeletal muscle
41	chr18:45693000-45694600	Enhancers	Skeletal Muscle Female	skeletal muscle
42	chr18:45693000-45695200	Enhancers	Fetal Lung	lung
43	chr18:45693200-45693600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
44	chr18:45693200-45693600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
45	chr18:45693200-45693600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
46	chr18:45693200-45693600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
47	chr18:45693200-45693800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr18:45693200-45693800	Enhancers	HUES6 Cell Line	embryonic stem cell
49	chr18:45693200-45693800	Enhancers	Fetal Thymus	thymus
50	chr18:45693200-45693800	Flanking Bivalent TSS/Enh	HepG2	liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links