Variant report

Variant	rs28656002
Chromosome Location	chr15:53040310-53040311
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs28539966	1.00[AMR][1000 genomes]
rs8036589	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8036828	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv471245	chr15:52607262-53187165	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	nsv1041421	chr15:52661342-53148286	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
3	nsv833006	chr15:52825954-53040462	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
4	nsv1049619	chr15:52995637-53041887	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
5	nsv569426	chr15:53014003-53046210	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Active TSS	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:53035600-53043400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr15:53038000-53043400	Weak transcription	Pancreas	Pancrea
3	chr15:53039200-53041400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr15:53039200-53041600	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr15:53039200-53043000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr15:53039400-53041400	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr15:53039600-53041400	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr15:53039800-53040600	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr15:53039800-53041400	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr15:53040000-53041400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr15:53040000-53041400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr15:53040000-53045000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr15:53040000-53048200	Weak transcription	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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