Variant report

Variant	rs28656153
Chromosome Location	chr7:85152325-85152326
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10228756	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10234253	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10239737	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10273730	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10274108	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10278999	1.00[AMR][1000 genomes]
rs10279470	1.00[AMR][1000 genomes]
rs12113005	1.00[AMR][1000 genomes]
rs28420599	1.00[AMR][1000 genomes]
rs28567503	1.00[AMR][1000 genomes]
rs28568573	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57360737	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59934717	1.00[AMR][1000 genomes]
rs73383857	1.00[AMR][1000 genomes]
rs73383858	1.00[AMR][1000 genomes]
rs73383859	1.00[AMR][1000 genomes]
rs73391532	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73391540	1.00[AMR][1000 genomes]
rs73391562	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73393549	1.00[AMR][1000 genomes]
rs73393553	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916645	chr7:84678606-85420011	Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv869255	chr7:84678606-85444155	Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv3327487	chr7:84901505-85320690	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv888649	chr7:85099898-85356773	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	esv2761345	chr7:85104681-85187726	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1034789	chr7:85137730-85175007	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv888650	chr7:85138665-85267174	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv1021810	chr7:85148963-85194663	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:85151000-85154800	Weak transcription	NHLF	lung
2	chr7:85151200-85152600	Enhancers	Fetal Lung	lung
3	chr7:85151200-85158000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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