Variant report

Variant	rs28656282
Chromosome Location	chr4:118954168-118954169
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOS	chr4:118953921-118954171	MCF10A-Er-Src	breast:	n/a	n/a
2	RFX5	chr4:118953723-118956316	SK-N-SH	brain:	n/a	n/a
3	STAT3	chr4:118953973-118954258	MCF10A-Er-Src	breast:	n/a	chr4:118954140-118954151
4	MAX	chr4:118954136-118955045	H1-hESC	embryonic stem cell:	n/a	chr4:118954694-118954704
5	FOS	chr4:118953865-118954198	MCF10A-Er-Src	breast:	n/a	n/a
6	NFIC	chr4:118954128-118954826	SK-N-SH	brain:	n/a	chr4:118954421-118954437
7	ZNF263	chr4:118953923-118955556	HEK293-T-REx	kidney:	n/a	n/a
8	MAX	chr4:118954008-118954780	ECC-1	luminal epithelium:	n/a	chr4:118954694-118954704
9	E2F6	chr4:118954123-118954842	H1-hESC	embryonic stem cell:	n/a	n/a
10	FOS	chr4:118953868-118954197	MCF10A-Er-Src	breast:	n/a	n/a
11	STAT3	chr4:118953966-118954238	MCF10A-Er-Src	breast:	n/a	chr4:118954140-118954151
12	MYC	chr4:118954007-118954371	MCF10A-Er-Src	breast:	n/a	n/a
13	KAP1	chr4:118953984-118954673	HEK293	kidney:	n/a	n/a
14	E2F6	chr4:118954071-118954950	H1-hESC	embryonic stem cell:	n/a	n/a
15	NFIC	chr4:118954047-118954766	ECC-1	luminal epithelium:	n/a	chr4:118954421-118954437
16	SMC3	chr4:118953824-118955805	SK-N-SH	brain:	n/a	chr4:118955536-118955550
17	HA-E2F1	chr4:118954080-118955453	MCF-7	breast:	n/a	n/a
18	JUND	chr4:118953912-118954201	H1-hESC	embryonic stem cell:	n/a	n/a
19	STAT3	chr4:118953967-118954235	MCF10A-Er-Src	breast:	n/a	chr4:118954140-118954151
20	MAX	chr4:118954093-118954674	H1-hESC	embryonic stem cell:	n/a	n/a
21	MAX	chr4:118954091-118955061	ECC-1	luminal epithelium:	n/a	chr4:118954694-118954704
22	RAD21	chr4:118953686-118956015	SK-N-SH	brain:	n/a	chr4:118955538-118955547
23	MAX	chr4:118954028-118954566	H1-hESC	embryonic stem cell:	n/a	n/a
24	NFIC	chr4:118954076-118954943	ECC-1	luminal epithelium:	n/a	chr4:118954421-118954437

Variant related genes	Relation type
NDST3	TF binding region

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs3134	0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519017	chr4:118828807-119771481	Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv1009076	chr4:118949490-119269424	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv1001236	chr4:118949490-119271243	Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:118953600-118956800	Active TSS	Brain Inferior Temporal Lobe	brain
2	chr4:118953800-118954200	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
3	chr4:118953800-118954200	Enhancers	Brain Substantia Nigra	brain
4	chr4:118953800-118954200	Bivalent Enhancer	A549	lung
5	chr4:118953800-118954600	Flanking Active TSS	Dnd41	blood
6	chr4:118953800-118955600	Active TSS	ES-I3 Cell Line	embryonic stem cell
7	chr4:118953800-118956200	Active TSS	Brain Angular Gyrus	brain
8	chr4:118953800-118956400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
9	chr4:118954000-118954200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr4:118954000-118954200	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
11	chr4:118954000-118954200	Flanking Bivalent TSS/Enh	HUES64 Cell Line	embryonic stem cell
12	chr4:118954000-118954200	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
13	chr4:118954000-118954200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr4:118954000-118954200	Bivalent Enhancer	Primary neutrophils fromperipheralblood	blood
15	chr4:118954000-118954200	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr4:118954000-118954200	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
17	chr4:118954000-118954200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr4:118954000-118954200	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr4:118954000-118954200	Bivalent Enhancer	Fetal Intestine Small	intestine
20	chr4:118954000-118954200	Flanking Active TSS	Fetal Stomach	stomach
21	chr4:118954000-118954200	Bivalent Enhancer	Fetal Thymus	thymus
22	chr4:118954000-118954200	Bivalent Enhancer	Sigmoid Colon	Sigmoid Colon
23	chr4:118954000-118954200	Bivalent/Poised TSS	Stomach Smooth Muscle	stomach
24	chr4:118954000-118954200	Bivalent Enhancer	NH-A	brain
25	chr4:118954000-118954200	Bivalent Enhancer	NHEK	skin
26	chr4:118954000-118954400	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
27	chr4:118954000-118954400	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
28	chr4:118954000-118954400	Bivalent Enhancer	Adipose Nuclei	Adipose
29	chr4:118954000-118954400	Enhancers	Liver	Liver
30	chr4:118954000-118954400	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
31	chr4:118954000-118954400	Enhancers	Pancreatic Islets	Pancreatic Islet
32	chr4:118954000-118954400	Bivalent Enhancer	Fetal Muscle Leg	muscle
33	chr4:118954000-118954600	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr4:118954000-118954600	Active TSS	Thymus	Thymus
35	chr4:118954000-118955800	Active TSS	HUES6 Cell Line	embryonic stem cell
36	chr4:118954000-118955800	Active TSS	Primary T cells from cord blood	blood
37	chr4:118954000-118955800	Active TSS	Brain Hippocampus Middle	brain
38	chr4:118954000-118956000	Active TSS	Brain Cingulate Gyrus	brain
39	chr4:118954000-118956800	Active TSS	Brain Anterior Caudate	brain

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