Variant report

Variant	rs28656996
Chromosome Location	chr7:66280409-66280410
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10236434	0.93[AFR][1000 genomes]
rs10250162	0.94[AFR][1000 genomes]
rs28438866	0.80[AFR][1000 genomes]
rs28619031	1.00[AFR][1000 genomes]
rs73700314	0.93[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026559	chr7:65617368-66370805	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	116 gene(s)	inside rSNPs	diseases
2	nsv888328	chr7:66173040-66327654	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	nsv888329	chr7:66234585-66376095	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	nsv981513	chr7:66276464-66291614	Weak transcription Enhancers Strong transcription Genic enhancers	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:66261000-66281400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr7:66275600-66280600	Weak transcription	Brain Anterior Caudate	brain
3	chr7:66275600-66281200	Weak transcription	Right Ventricle	heart
4	chr7:66275800-66280600	Weak transcription	Spleen	Spleen
5	chr7:66276000-66282200	Weak transcription	Primary hematopoietic stem cells	blood
6	chr7:66276000-66282800	Weak transcription	Brain Germinal Matrix	brain
7	chr7:66276200-66282000	Weak transcription	GM12878-XiMat	blood
8	chr7:66276200-66282200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr7:66276400-66280600	Weak transcription	Primary T cells fromperipheralblood	blood
10	chr7:66276400-66281000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr7:66276600-66281200	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr7:66276800-66281200	Weak transcription	Fetal Thymus	thymus
13	chr7:66276800-66284800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr7:66277000-66281200	Weak transcription	HMEC	breast
15	chr7:66277000-66282000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr7:66277000-66282000	Weak transcription	Monocytes-CD14+_RO01746	blood
17	chr7:66277000-66282200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr7:66277200-66280600	Weak transcription	Duodenum Mucosa	Duodenum
19	chr7:66277200-66281200	Weak transcription	NHEK	skin
20	chr7:66277200-66282200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
21	chr7:66277200-66282200	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr7:66277400-66281400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr7:66277600-66280600	Weak transcription	Muscle Satellite Cultured Cells	--
24	chr7:66277600-66281000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr7:66277800-66280800	Weak transcription	Osteobl	bone
26	chr7:66277800-66284800	Weak transcription	Cortex derived primary cultured neurospheres	brain
27	chr7:66277800-66288600	Weak transcription	Placenta Amnion	Placenta Amnion
28	chr7:66278400-66281000	Weak transcription	Fetal Muscle Leg	muscle
29	chr7:66278400-66282000	Weak transcription	Primary B cells from peripheral blood	blood
30	chr7:66278400-66282200	Weak transcription	Primary neutrophils fromperipheralblood	blood
31	chr7:66278400-66282200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr7:66278400-66282200	Weak transcription	HepG2	liver
33	chr7:66278600-66281200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr7:66278600-66281400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr7:66278600-66282200	Weak transcription	Primary monocytes fromperipheralblood	blood
36	chr7:66278600-66282200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr7:66278600-66282200	Weak transcription	Adipose Nuclei	Adipose
38	chr7:66278600-66282200	Weak transcription	Fetal Muscle Trunk	muscle
39	chr7:66278600-66282200	Weak transcription	HSMMtube	muscle
40	chr7:66278800-66282000	Weak transcription	Fetal Intestine Small	intestine
41	chr7:66278800-66284800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr7:66279000-66283400	Weak transcription	Fetal Stomach	stomach
43	chr7:66279200-66280800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr7:66279200-66280800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
45	chr7:66279200-66281000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr7:66279400-66280600	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr7:66279400-66281800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr7:66279800-66281400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
49	chr7:66280200-66281000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chr7:66280400-66281000	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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