Variant report

Variant	rs28658067
Chromosome Location	chr17:67054554-67054555
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs28558647	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067334	chr17:66695039-67221585	Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
2	nsv543411	chr17:66695039-67221585	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
3	nsv833526	chr17:66980758-67137034	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:67040800-67055600	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr17:67041400-67072600	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr17:67044400-67057200	Weak transcription	Fetal Lung	lung
4	chr17:67046200-67057000	Weak transcription	HUVEC	blood vessel
5	chr17:67047600-67055000	Weak transcription	Adipose Nuclei	Adipose
6	chr17:67047800-67055400	Weak transcription	Osteobl	bone
7	chr17:67048400-67057600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr17:67049400-67055200	Weak transcription	Right Atrium	heart
9	chr17:67050200-67055000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr17:67052000-67055200	Weak transcription	NHDF-Ad	bronchial
11	chr17:67052200-67055400	Weak transcription	Fetal Kidney	kidney
12	chr17:67052800-67054600	ZNF genes & repeats	Ovary	ovary
13	chr17:67053600-67055000	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr17:67053600-67055200	Weak transcription	Fetal Muscle Leg	muscle
15	chr17:67053800-67057000	Weak transcription	Stomach Mucosa	stomach
16	chr17:67053800-67066800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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