Variant report

Variant	rs2866009
Chromosome Location	chr4:99267182-99267183
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs7655622	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529623	chr4:98501338-99460166	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	nsv1004616	chr4:99085875-99308901	Genic enhancers Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	esv2763801	chr4:99094892-99413853	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	esv2754250	chr4:99094922-99527122	Strong transcription Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
5	nsv879651	chr4:99105055-99441349	Weak transcription Genic enhancers Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
6	nsv879652	chr4:99125659-99303633	Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
7	nsv1004181	chr4:99208152-99529576	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:99212400-99287800	Weak transcription	Thymus	Thymus
2	chr4:99215000-99317000	Weak transcription	Left Ventricle	heart
3	chr4:99223800-99288000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
4	chr4:99252400-99287400	Weak transcription	Aorta	Aorta
5	chr4:99254400-99286400	Weak transcription	Ovary	ovary
6	chr4:99255800-99273400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr4:99256200-99287200	Weak transcription	Right Ventricle	heart
8	chr4:99256600-99286000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr4:99256800-99286400	Weak transcription	Fetal Intestine Small	intestine
10	chr4:99257800-99273200	Weak transcription	HUVEC	blood vessel
11	chr4:99258400-99274000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr4:99258800-99286000	Weak transcription	Pancreas	Pancrea
13	chr4:99259200-99275800	Weak transcription	K562	blood
14	chr4:99259600-99273800	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr4:99259800-99273400	Weak transcription	Primary hematopoietic stem cells	blood
16	chr4:99260200-99273600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
17	chr4:99260400-99268800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr4:99260400-99273600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr4:99260600-99268600	Weak transcription	HUES6 Cell Line	embryonic stem cell
20	chr4:99260800-99276600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
21	chr4:99261000-99269400	Weak transcription	HUES48 Cell Line	embryonic stem cell
22	chr4:99261200-99272600	Weak transcription	Lung	lung
23	chr4:99261400-99273600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr4:99262400-99267800	Weak transcription	Primary T helper cells fromperipheralblood	blood
25	chr4:99262600-99287000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr4:99262800-99273800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr4:99262800-99276800	Weak transcription	Primary B cells from peripheral blood	blood
28	chr4:99262800-99286000	Weak transcription	Primary T cells from cord blood	blood
29	chr4:99262800-99286400	Weak transcription	Cortex derived primary cultured neurospheres	brain
30	chr4:99262800-99286600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr4:99262800-99290600	Weak transcription	NH-A	brain
32	chr4:99262800-99295600	Weak transcription	Brain Hippocampus Middle	brain
33	chr4:99262800-99333400	Weak transcription	Sigmoid Colon	Sigmoid Colon
34	chr4:99263000-99296000	Weak transcription	Brain Angular Gyrus	brain
35	chr4:99263200-99288600	Weak transcription	Muscle Satellite Cultured Cells	--
36	chr4:99263600-99267800	Strong transcription	Primary T helper cells PMA-I stimulated	--
37	chr4:99263600-99274000	Weak transcription	Adipose Nuclei	Adipose
38	chr4:99263600-99274600	Weak transcription	Brain Germinal Matrix	brain
39	chr4:99263600-99276800	Weak transcription	Brain Cingulate Gyrus	brain
40	chr4:99263800-99287200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
41	chr4:99264000-99287000	Weak transcription	Duodenum Smooth Muscle	Duodenum
42	chr4:99264200-99267400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr4:99264200-99267400	Strong transcription	Primary T cells fromperipheralblood	blood
44	chr4:99264200-99267400	Strong transcription	Fetal Thymus	thymus
45	chr4:99264200-99267600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr4:99264200-99267600	Strong transcription	Primary B cells from cord blood	blood
47	chr4:99264200-99267600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr4:99264200-99268600	Strong transcription	Dnd41	blood
49	chr4:99264200-99268600	Weak transcription	GM12878-XiMat	blood
50	chr4:99264200-99338200	Weak transcription	Skeletal Muscle Female	skeletal muscle

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