Variant report

Variant	rs2866014
Chromosome Location	chr4:99568946-99568947
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:99566031..99568525-chr4:99568795..99571513,2	MCF-7	breast:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10034419	0.91[ASN][1000 genomes]
rs12498284	0.85[CEU][hapmap];0.83[EUR][1000 genomes]
rs12505801	0.91[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs12507328	0.82[CHB][hapmap];0.94[JPT][hapmap];0.87[ASN][1000 genomes]
rs1528545	0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs28713515	0.94[ASN][1000 genomes]
rs61519543	0.81[ASN][1000 genomes]
rs6532755	0.90[ASN][1000 genomes]
rs67310180	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6830917	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6837798	0.94[ASN][1000 genomes]
rs6837860	0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs6837959	0.93[ASN][1000 genomes]
rs7661136	0.95[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7671702	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs7686325	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs871473	0.95[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs871474	0.86[CHB][hapmap]
rs9307228	0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv594940	chr4:99542475-99573350	Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:99548000-99569200	Weak transcription	Gastric	stomach
2	chr4:99548000-99577000	Weak transcription	Esophagus	oesophagus
3	chr4:99552600-99569600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr4:99552800-99569200	Weak transcription	Fetal Stomach	stomach
5	chr4:99554200-99569200	Weak transcription	Spleen	Spleen
6	chr4:99560200-99569200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr4:99562000-99569200	Weak transcription	Fetal Brain Male	brain
8	chr4:99564000-99571600	Enhancers	Brain Inferior Temporal Lobe	brain
9	chr4:99564200-99569200	Enhancers	Brain Cingulate Gyrus	brain
10	chr4:99564200-99570400	Enhancers	Cortex derived primary cultured neurospheres	brain
11	chr4:99564400-99575600	Weak transcription	Fetal Kidney	kidney
12	chr4:99564600-99569400	Weak transcription	Fetal Heart	heart
13	chr4:99565200-99569200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr4:99565200-99569200	Weak transcription	NHLF	lung
15	chr4:99565200-99569400	Weak transcription	HMEC	breast
16	chr4:99565200-99571200	Weak transcription	A549	lung
17	chr4:99565200-99571200	Weak transcription	NHEK	skin
18	chr4:99565200-99571400	Weak transcription	Primary hematopoietic stem cells	blood
19	chr4:99565200-99571400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr4:99565200-99571400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr4:99565800-99571200	Enhancers	Brain Anterior Caudate	brain
22	chr4:99565800-99571200	Enhancers	Brain Substantia Nigra	brain
23	chr4:99566000-99569400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr4:99566000-99570600	Enhancers	Brain Hippocampus Middle	brain
25	chr4:99566000-99571200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
26	chr4:99566000-99575200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
27	chr4:99566200-99569200	Weak transcription	Fetal Thymus	thymus
28	chr4:99566400-99569800	Enhancers	Brain Germinal Matrix	brain
29	chr4:99566800-99569400	Weak transcription	NH-A	brain
30	chr4:99566800-99569800	Weak transcription	H9 Cell Line	embryonic stem cell
31	chr4:99566800-99570000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
32	chr4:99567000-99571000	Enhancers	Breast Myoepithelial Primary Cells	Breast
33	chr4:99567000-99571000	Enhancers	HUVEC	blood vessel
34	chr4:99567400-99569200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
35	chr4:99567400-99569400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr4:99567400-99570200	Enhancers	Brain Angular Gyrus	brain
37	chr4:99567600-99569200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr4:99567600-99569200	Weak transcription	Ovary	ovary
39	chr4:99567600-99574200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
40	chr4:99567600-99574400	Weak transcription	Primary T helper cells PMA-I stimulated	--
41	chr4:99567600-99574800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
42	chr4:99567800-99569200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr4:99568000-99569200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr4:99568000-99570600	Enhancers	Muscle Satellite Cultured Cells	--
45	chr4:99568000-99570800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr4:99568200-99569400	Enhancers	Fetal Lung	lung
47	chr4:99568200-99569400	Enhancers	Osteobl	bone
48	chr4:99568200-99571600	Enhancers	Fetal Brain Female	brain
49	chr4:99568200-99571600	Enhancers	NHDF-Ad	bronchial
50	chr4:99568400-99569200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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