Variant report

Variant	rs28661665
Chromosome Location	chr5:8061030-8061031
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs10057156	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916892	chr5:7634377-8158890	Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv533983	chr5:7701457-8275379	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv597005	chr5:7860404-8093077	Enhancers Strong transcription Genic enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
4	nsv1020991	chr5:8014412-8129558	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:8058200-8061800	Weak transcription	Spleen	Spleen
2	chr5:8058400-8062000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr5:8059000-8061200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr5:8059600-8061400	Enhancers	H9 Cell Line	embryonic stem cell
5	chr5:8059800-8061600	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr5:8060000-8061200	Enhancers	H1 Cell Line	embryonic stem cell
7	chr5:8060000-8061400	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr5:8060000-8063000	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr5:8060200-8061200	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr5:8060200-8061200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr5:8060200-8061200	Enhancers	Primary B cells from peripheral blood	blood
12	chr5:8060200-8061200	Enhancers	Fetal Muscle Trunk	muscle
13	chr5:8060200-8062600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr5:8060400-8061600	Enhancers	iPS-15b Cell Line	embryonic stem cell
15	chr5:8060400-8062600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr5:8060600-8062200	Enhancers	Brain Hippocampus Middle	brain
17	chr5:8060600-8063400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr5:8060600-8063800	Enhancers	Ovary	ovary
19	chr5:8060800-8061600	Enhancers	Brain Inferior Temporal Lobe	brain
20	chr5:8060800-8061800	Enhancers	Brain Cingulate Gyrus	brain
21	chr5:8060800-8061800	Enhancers	Brain Germinal Matrix	brain
22	chr5:8060800-8062200	Enhancers	Fetal Muscle Leg	muscle
23	chr5:8060800-8063200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
24	chr5:8061000-8062200	Enhancers	Brain Substantia Nigra	brain

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