Variant report

Variant	rs28666818
Chromosome Location	chr7:100000077-100000078
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:99997930..100000096-chr7:100032489..100035082,2	MCF-7	breast:
2	chr7:99964487..99968212-chr7:99999516..100003937,5	K562	blood:
3	chr7:99998688..100005691-chr7:100025198..100032529,13	K562	blood:
4	chr7:99999981..100004056-chr7:100025955..100028097,3	MCF-7	breast:
5	chr7:99998986..100001461-chr7:100032501..100034124,2	K562	blood:
6	chr7:99997615..100000577-chr7:100006796..100009409,2	MCF-7	breast:
7	chr7:99964978..99968212-chr7:99999516..100003937,4	K562	blood:
8	chr7:99999690..100001643-chr7:100005902..100008109,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000146834	Chromatin interaction
ENSG00000160813	Chromatin interaction
ENSG00000240211	Chromatin interaction
ENSG00000241357	Chromatin interaction
ENSG00000078487	Chromatin interaction
ENSG00000085514	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10261511	1.00[MKK][hapmap]
rs10267127	1.00[MKK][hapmap]
rs10277378	1.00[MKK][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3350965	chr7:99747460-100146105	Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	304 gene(s)	inside rSNPs	diseases
2	esv1829095	chr7:99814675-100494084	Bivalent Enhancer Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	393 gene(s)	inside rSNPs	diseases
3	nsv831071	chr7:99918025-100113413	Weak transcription Enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	287 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:99940800-100014600	Weak transcription	Right Atrium	heart
2	chr7:99962400-100020600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr7:99987800-100025400	Weak transcription	Right Ventricle	heart
4	chr7:99995000-100025400	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr7:99995000-100026000	Weak transcription	Primary T cells from cord blood	blood
6	chr7:99995200-100005000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
7	chr7:99995600-100004400	Weak transcription	GM12878-XiMat	blood
8	chr7:99995600-100004800	Weak transcription	Primary T helper cells PMA-I stimulated	--
9	chr7:99995800-100005200	Weak transcription	Primary T helper cells fromperipheralblood	blood
10	chr7:99995800-100005200	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr7:99996000-100006800	Strong transcription	Primary neutrophils fromperipheralblood	blood
12	chr7:99996200-100000800	Weak transcription	Fetal Muscle Leg	muscle
13	chr7:99996200-100001200	Weak transcription	Fetal Muscle Trunk	muscle
14	chr7:99996200-100007200	Weak transcription	Spleen	Spleen
15	chr7:99996200-100013800	Weak transcription	Fetal Stomach	stomach
16	chr7:99996200-100025400	Weak transcription	Brain Substantia Nigra	brain
17	chr7:99996400-100004800	Weak transcription	Primary B cells from peripheral blood	blood
18	chr7:99996400-100005000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
19	chr7:99996600-100000200	Strong transcription	Primary monocytes fromperipheralblood	blood
20	chr7:99996600-100000200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
21	chr7:99996600-100004800	Weak transcription	Primary B cells from cord blood	blood
22	chr7:99996600-100016800	Weak transcription	Brain Angular Gyrus	brain
23	chr7:99996600-100017000	Weak transcription	Adipose Nuclei	Adipose
24	chr7:99997000-100016000	Weak transcription	Ovary	ovary
25	chr7:99997400-100000400	Weak transcription	Brain Germinal Matrix	brain
26	chr7:99997400-100025600	Weak transcription	Aorta	Aorta
27	chr7:99997800-100005000	Weak transcription	Thymus	Thymus
28	chr7:99998200-100000200	Strong transcription	Brain Hippocampus Middle	brain
29	chr7:99998200-100002800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
30	chr7:99998400-100000200	Strong transcription	Liver	Liver
31	chr7:99998800-100008200	Weak transcription	Lung	lung
32	chr7:99998800-100025400	Weak transcription	Brain Cingulate Gyrus	brain
33	chr7:99999000-100025400	Weak transcription	Left Ventricle	heart
34	chr7:99999400-100000200	Strong transcription	Brain Anterior Caudate	brain
35	chr7:99999400-100000400	Strong transcription	Stomach Smooth Muscle	stomach
36	chr7:99999400-100025400	Weak transcription	Psoas Muscle	Psoas
37	chr7:99999600-100000200	Strong transcription	Brain Inferior Temporal Lobe	brain
38	chr7:99999800-100000200	Genic enhancers	Monocytes-CD14+_RO01746	blood
39	chr7:100000000-100000200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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