Variant report

Variant	rs28666837
Chromosome Location	chr7:21509441-21509442
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:21502614..21504493-chr7:21507418..21509927,2	K562	blood:

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10216269	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10228982	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10233925	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10234687	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10235230	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10238881	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs10250403	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10250517	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10253281	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10254442	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10254858	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10255890	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10258911	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10259756	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10268107	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10274755	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10275955	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12674126	1.00[AMR][1000 genomes]
rs2158415	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2285941	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs28419471	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28490171	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28528275	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28580454	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28657649	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28661383	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55840028	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55879742	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55908918	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57142662	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs57213984	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs58025439	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs58223300	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61043546	0.96[AFR][1000 genomes]
rs6946711	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6947378	0.96[AFR][1000 genomes]
rs6953601	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6972886	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6973902	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73682608	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73685128	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73685129	0.88[AFR][1000 genomes]
rs73685130	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73685131	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73685134	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73685135	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73685138	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73685141	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73685144	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73685152	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73685154	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7792713	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027302	chr7:21391598-21727016	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv538800	chr7:21391598-21727016	Enhancers Genic enhancers Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
3	nsv1028434	chr7:21468437-21636671	ZNF genes & repeats Strong transcription Bivalent/Poised TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	nsv1023655	chr7:21486485-21727016	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
5	nsv538801	chr7:21486485-21727016	ZNF genes & repeats Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region CpG island Chromatin interactive region miRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
6	nsv830921	chr7:21489100-21688016	Strong transcription ZNF genes & repeats Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:21470400-21516600	Weak transcription	Liver	Liver
2	chr7:21470400-21536400	Weak transcription	Esophagus	oesophagus
3	chr7:21474800-21520600	Weak transcription	Brain Angular Gyrus	brain
4	chr7:21487400-21557000	Weak transcription	Aorta	Aorta
5	chr7:21491000-21526800	Weak transcription	Brain Hippocampus Middle	brain
6	chr7:21491000-21536400	Weak transcription	Left Ventricle	heart
7	chr7:21492200-21545200	Weak transcription	Small Intestine	intestine
8	chr7:21493000-21539000	Weak transcription	Spleen	Spleen
9	chr7:21493800-21529600	Weak transcription	Brain Anterior Caudate	brain
10	chr7:21494400-21517400	Weak transcription	Fetal Kidney	kidney
11	chr7:21495200-21521600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr7:21495800-21516800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr7:21496000-21516600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
14	chr7:21496000-21519200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr7:21496200-21517800	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr7:21496600-21517600	Weak transcription	Dnd41	blood
17	chr7:21496600-21521600	Weak transcription	Adipose Nuclei	Adipose
18	chr7:21496800-21517600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr7:21497200-21516200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr7:21497600-21520800	Weak transcription	HUVEC	blood vessel
21	chr7:21498000-21518800	Weak transcription	Rectal Smooth Muscle	rectum
22	chr7:21498200-21532400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr7:21498600-21543600	Weak transcription	Pancreas	Pancrea
24	chr7:21498800-21511800	Weak transcription	Skeletal Muscle Female	skeletal muscle
25	chr7:21498800-21517200	Weak transcription	Primary neutrophils fromperipheralblood	blood
26	chr7:21499600-21516600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
27	chr7:21500000-21512600	Weak transcription	Primary hematopoietic stem cells	blood
28	chr7:21500000-21530400	Weak transcription	Cortex derived primary cultured neurospheres	brain
29	chr7:21500000-21552800	Weak transcription	Brain Inferior Temporal Lobe	brain
30	chr7:21500200-21516600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
31	chr7:21500200-21520600	Weak transcription	H9 Cell Line	embryonic stem cell
32	chr7:21500200-21520800	Weak transcription	GM12878-XiMat	blood
33	chr7:21500400-21517400	Weak transcription	HUES64 Cell Line	embryonic stem cell
34	chr7:21500400-21529800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr7:21500600-21516400	Weak transcription	HUES6 Cell Line	embryonic stem cell
36	chr7:21500600-21516600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr7:21500600-21519000	Weak transcription	HUES48 Cell Line	embryonic stem cell
38	chr7:21501000-21516600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
39	chr7:21501000-21527400	Weak transcription	Fetal Stomach	stomach
40	chr7:21501200-21516600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
41	chr7:21501400-21520200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
42	chr7:21501400-21520600	Weak transcription	H1 Cell Line	embryonic stem cell
43	chr7:21501400-21528800	Weak transcription	Thymus	Thymus
44	chr7:21501400-21531000	Weak transcription	Fetal Intestine Large	intestine
45	chr7:21501600-21516600	Weak transcription	Primary T cells fromperipheralblood	blood
46	chr7:21501800-21509600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
47	chr7:21502000-21516600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
48	chr7:21502000-21516800	Weak transcription	Primary T helper cells fromperipheralblood	blood
49	chr7:21502200-21521200	Weak transcription	Primary monocytes fromperipheralblood	blood
50	chr7:21503200-21512400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood

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