Variant report

Variant	rs28667250
Chromosome Location	chr9:139582681-139582682
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr9:139580676-139582874	Hela-S3	cervix:	n/a	n/a
2	MAX	chr9:139581387-139582839	ECC-1	luminal epithelium:	n/a	chr9:139582650-139582661 chr9:139581391-139581401
3	MAZ	chr9:139580724-139582998	GM12878	blood:	n/a	chr9:139581237-139581247 chr9:139581186-139581195 chr9:139582650-139582661 chr9:139581391-139581401
4	ZBTB7A	chr9:139581146-139583012	ECC-1	luminal epithelium:	n/a	chr9:139582460-139582469
5	TFAP2C	chr9:139582224-139582816	Hela-S3	cervix:	n/a	n/a
6	FOXM1	chr9:139582041-139582940	ECC-1	luminal epithelium:	n/a	n/a
7	TFAP2A	chr9:139582216-139582700	Hela-S3	cervix:	n/a	chr9:139582441-139582453 chr9:139582441-139582453 chr9:139582244-139582259 chr9:139582441-139582453
8	MXI1	chr9:139582331-139582793	Hela-S3	cervix:	n/a	n/a
9	HMGN3	chr9:139582161-139582719	K562	blood:	n/a	n/a
10	JUND	chr9:139582576-139583259	GM12878	blood:	n/a	chr9:139583055-139583069 chr9:139583187-139583198
11	RFX5	chr9:139582335-139582751	Hela-S3	cervix:	n/a	n/a
12	USF1	chr9:139582050-139582798	ECC-1	luminal epithelium:	n/a	chr9:139582260-139582276 chr9:139582268-139582284
13	TCF12	chr9:139581860-139582995	ECC-1	luminal epithelium:	n/a	chr9:139582239-139582249 chr9:139581960-139581967
14	TCF12	chr9:139582410-139582690	GM12878	blood:	n/a	n/a
15	MAX	chr9:139581130-139582729	A549	lung:	n/a	chr9:139581237-139581247 chr9:139581186-139581195 chr9:139582650-139582661 chr9:139581391-139581401
16	EGR1	chr9:139582149-139582696	ECC-1	luminal epithelium:	n/a	chr9:139582659-139582669
17	USF2	chr9:139582482-139582760	Hela-S3	cervix:	n/a	n/a
18	MTA3	chr9:139582359-139583234	GM12878	blood:	n/a	n/a
19	SMARCB1	chr9:139582194-139582799	Hela-S3	cervix:	n/a	n/a
20	EP300	chr9:139581929-139582937	ECC-1	luminal epithelium:	n/a	n/a
21	MYC	chr9:139581332-139582757	Hela-S3	cervix:	n/a	chr9:139582650-139582661 chr9:139581391-139581401
22	ZBTB7A	chr9:139580693-139582742	K562	blood:	n/a	chr9:139582460-139582469
23	NFIC	chr9:139582642-139583125	GM12878	blood:	n/a	n/a
24	CEBPB	chr9:139582111-139582692	ECC-1	luminal epithelium:	n/a	n/a
25	MAZ	chr9:139581311-139582766	Hela-S3	cervix:	n/a	chr9:139582650-139582661 chr9:139581391-139581401
26	EBF1	chr9:139582041-139582743	GM12878	blood:	n/a	chr9:139582171-139582180 chr9:139582171-139582181 chr9:139582169-139582182 chr9:139582170-139582181
27	CTBP2	chr9:139582382-139583054	H1-hESC	embryonic stem cell:	n/a	n/a
28	ESR1	chr9:139582121-139582811	ECC-1	luminal epithelium:	n/a	n/a
29	ELF1	chr9:139582299-139583605	GM12878	blood:	n/a	chr9:139583300-139583309
30	ESR1	chr9:139582213-139582793	ECC-1	luminal epithelium:	n/a	n/a
31	ESR1	chr9:139582126-139582726	ECC-1	luminal epithelium:	n/a	n/a
32	MAX	chr9:139582025-139582809	ECC-1	luminal epithelium:	n/a	chr9:139582650-139582661
33	MAX	chr9:139581350-139582741	Hela-S3	cervix:	n/a	chr9:139582650-139582661 chr9:139581391-139581401
34	SPI1	chr9:139582415-139583315	GM12878	blood:	n/a	chr9:139582923-139582932
35	EGR1	chr9:139582159-139582827	ECC-1	luminal epithelium:	n/a	chr9:139582659-139582669
36	PML	chr9:139582635-139583180	GM12878	blood:	n/a	n/a
37	TEAD4	chr9:139582072-139582840	ECC-1	luminal epithelium:	n/a	n/a
38	POLR2A	chr9:139582328-139582718	Hela-S3	cervix:	n/a	n/a
39	EP300	chr9:139581952-139582875	ECC-1	luminal epithelium:	n/a	n/a
40	POLR2A	chr9:139580736-139582818	Hela-S3	cervix:	n/a	n/a
41	HCFC1	chr9:139579873-139583289	Hela-S3	cervix:	n/a	n/a
42	MAX	chr9:139581121-139582740	MCF-7	breast:	n/a	chr9:139581237-139581247 chr9:139581186-139581195 chr9:139582650-139582661 chr9:139581391-139581401
43	MXI1	chr9:139582562-139582938	GM12878	blood:	n/a	n/a
44	MYC	chr9:139582466-139582690	MCF-7	breast:	n/a	chr9:139582650-139582661
45	RUNX3	chr9:139582660-139583155	GM12878	blood:	n/a	n/a
46	POLR2A	chr9:139580775-139582846	Hela-S3	cervix:	n/a	n/a
47	RUNX3	chr9:139582670-139583179	GM12878	blood:	n/a	n/a
48	CEBPB	chr9:139582318-139582689	Hela-S3	cervix:	n/a	n/a
49	NR3C1	chr9:139582207-139582737	ECC-1	luminal epithelium:	n/a	chr9:139582258-139582271
50	TEAD4	chr9:139582088-139582745	ECC-1	luminal epithelium:	n/a	n/a

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr9:139582673-139582723	NHBE	bronchial:	n/a
2	chr9:139582673-139582723	SK-N-SH	brain:	n/a
3	chr9:139582673-139582723	HEK293	kidney:	embryo
4	chr9:139582673-139582723	AG09319	gingival:	n/a
5	chr9:139582673-139582723	HAEpiC	amniotic membrane:	n/a
6	chr9:139582673-139582723	BJ	skin:	n/a
7	chr9:139582673-139582723	HEEpiC	esophagus:	n/a
8	chr9:139582673-139582723	HPAEpiC	pulmonary alveolar:	n/a
9	chr9:139582673-139582723	Hepatocyte	liver:	n/a
10	chr9:139582673-139582723	AG04450	lung:	fetal
11	chr9:139582673-139582723	NH-A	brain:	n/a
12	chr9:139582673-139582723	GM06990	blood:	n/a
13	chr9:139582673-139582723	PANC-1	pancreas:	n/a
14	chr9:139582673-139582723	CMK	blood:	n/a
15	chr9:139582673-139582723	HUVEC	blood vessel:	n/a
16	chr9:139582673-139582723	MCF10A-Er-Src	breast:	n/a
17	chr9:139582673-139582723	PFSK-1	brain:	n/a
18	chr9:139582673-139582723	MCF-7	breast:	n/a
19	chr9:139582673-139582723	Caco-2	colon:	n/a
20	chr9:139582673-139582723	ECC-1	luminal epithelium:	n/a
21	chr9:139582673-139582723	AG09309	skin:	n/a
22	chr9:139582673-139582723	HRPEpiC	eye:	n/a
23	chr9:139582673-139582723	HNPCEpiC	eye:	n/a
24	chr9:139582673-139582723	IMR90	lung:	fetal
25	chr9:139582673-139582723	HCPEpiC	choroid plexus:	n/a
26	chr9:139582673-139582723	HepG2	liver:	n/a
27	chr9:139582673-139582723	HCM	heart:	n/a
28	chr9:139582673-139582723	AG10803	skin:	n/a
29	chr9:139582673-139582723	AG04449	skin:	fetal
30	chr9:139582673-139582723	NHDF-neo	bronchial:	n/a
31	chr9:139582673-139582723	GM19239	blood:	n/a
32	chr9:139582673-139582723	SKMC	muscle:	n/a
33	chr9:139582673-139582723	U87	brain:	n/a
34	chr9:139582673-139582723	GM12891	blood:	n/a
35	chr9:139582673-139582723	SK-N-SH_RA	brain:	n/a
36	chr9:139582673-139582723	SK-N-MC	brain:	n/a
37	chr9:139582673-139582723	HIPEpiC	eye:	n/a
38	chr9:139582673-139582723	GM12878	blood:	n/a
39	chr9:139582673-139582723	GM12892	blood:	n/a
40	chr9:139582673-139582723	ovcar-3	ovarian:	n/a
41	chr9:139582673-139582723	T-47D	breast:	n/a
42	chr9:139582673-139582723	Jurkat	blood:	n/a
43	chr9:139582673-139582723	NB4	blood:	n/a
44	chr9:139582673-139582723	BE2_C	brain:	n/a
45	chr9:139582673-139582723	ProgFib	skin:	n/a
46	chr9:139582673-139582723	LNCaP	prostate:	n/a
47	chr9:139582673-139582723	HCT-116	colon:	n/a
48	chr9:139582673-139582723	A549	lung:	n/a
49	chr9:139582673-139582723	SAEC	small airway:	n/a
50	chr9:139582673-139582723	HRE	kidney:	n/a

No.	Distal block	Cell Line	Cell type
1	chr9:139439626..139442043-chr9:139581392..139583416,2	MCF-7	breast:
2	chr9:139376618..139380534-chr9:139580377..139583591,6	MCF-7	breast:
3	chr9:139573496..139585443-chr9:139619265..139623221,16	MCF-7	breast:
4	chr9:139376187..139379825-chr9:139579584..139582843,5	K562	blood:
5	chr9:139580165..139583818-chr9:139653958..139659503,5	K562	blood:
6	chr9:139581042..139582796-chr9:139835753..139837526,2	K562	blood:
7	chr1:51984077..51984958-chr9:139581818..139582685,2	Hela-S3	cervix:
8	chr9:139377474..139381133-chr9:139579584..139583189,6	K562	blood:
9	chr1:67895161..67895880-chr9:139582329..139582983,2	Hela-S3	cervix:
10	chr3:120067793..120068405-chr9:139582195..139582802,2	Hela-S3	cervix:
11	chr9:139570497..139595051-chr9:139610806..139626266,85	MCF-7	breast:

Variant related genes	Relation type
AGPAT2	TF binding region
AGPAT2	CpG island
ENSG00000237886	Chromatin interaction
ENSG00000233016	Chromatin interaction
ENSG00000240661	Chromatin interaction
ENSG00000142864	Chromatin interaction
ENSG00000177984	Chromatin interaction
ENSG00000085832	Chromatin interaction
ENSG00000165716	Chromatin interaction
ENSG00000159069	Chromatin interaction
ENSG00000148400	Chromatin interaction
ENSG00000196366	Chromatin interaction
ENSG00000163428	Chromatin interaction
ENSG00000265181	Chromatin interaction

Extended variants
information (count: 98 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10123493	1.00[AMR][1000 genomes]
rs10124130	1.00[AMR][1000 genomes]
rs10156573	0.86[LWK][hapmap]
rs12342559	1.00[AMR][1000 genomes]
rs28497483	1.00[AMR][1000 genomes]
rs55885267	1.00[AMR][1000 genomes]
rs73668357	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73668368	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:90 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1849811	chr9:138939662-139755001	Bivalent Enhancer Strong transcription Weak transcription Genic enhancers Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	323 gene(s)	inside rSNPs	diseases
2	nsv894313	chr9:138965868-139583155	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	233 gene(s)	inside rSNPs	diseases
3	nsv894314	chr9:138965868-139596420	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	233 gene(s)	inside rSNPs	diseases
4	esv1822553	chr9:138967205-139755539	Genic enhancers Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	323 gene(s)	inside rSNPs	diseases
5	nsv430117	chr9:139049055-139608163	Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	205 gene(s)	inside rSNPs	diseases
6	nsv894326	chr9:139057463-139647074	Weak transcription Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	260 gene(s)	inside rSNPs	diseases
7	nsv894331	chr9:139061474-139590934	Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	204 gene(s)	inside rSNPs	diseases
8	nsv894337	chr9:139069713-139669111	Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	261 gene(s)	inside rSNPs	diseases
9	esv1851120	chr9:139101947-139711758	Bivalent Enhancer Weak transcription Active TSS Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	275 gene(s)	inside rSNPs	diseases
10	nsv430118	chr9:139101947-139795504	Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	299 gene(s)	inside rSNPs	diseases
11	nsv894351	chr9:139124856-139679387	Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	262 gene(s)	inside rSNPs	diseases
12	nsv540342	chr9:139218422-139973312	Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	317 gene(s)	inside rSNPs	diseases
13	esv2758204	chr9:139252829-139826485	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	270 gene(s)	inside rSNPs	diseases
14	esv2759720	chr9:139252829-139826485	Weak transcription Enhancers Genic enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	270 gene(s)	inside rSNPs	diseases
15	nsv469918	chr9:139254317-140068342	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	341 gene(s)	inside rSNPs	diseases
16	esv1836722	chr9:139301583-139669111	Bivalent Enhancer Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	212 gene(s)	inside rSNPs	diseases
17	nsv894371	chr9:139323201-139590934	Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	142 gene(s)	inside rSNPs	diseases
18	nsv894374	chr9:139335599-139596420	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	140 gene(s)	inside rSNPs	diseases
19	esv1799492	chr9:139341612-139711758	Transcr. at gene 5' and 3' Enhancers Flanking Bivalent TSS/Enh Strong transcription Weak transcription Bivalent Enhancer Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	216 gene(s)	inside rSNPs	diseases
20	esv1807611	chr9:139344200-139633839	Enhancers Flanking Active TSS Genic enhancers Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	199 gene(s)	inside rSNPs	diseases
21	nsv540346	chr9:139360142-140164011	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	471 gene(s)	inside rSNPs	diseases
22	esv1803718	chr9:139368953-139643023	Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	199 gene(s)	inside rSNPs	diseases
23	esv1851291	chr9:139371234-139669111	Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	200 gene(s)	inside rSNPs	diseases
24	nsv894382	chr9:139376426-139590934	Flanking Active TSS Weak transcription Strong transcription Genic enhancers Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	140 gene(s)	inside rSNPs	diseases
25	esv1835929	chr9:139376426-139617836	Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	148 gene(s)	inside rSNPs	diseases
26	nsv894383	chr9:139376426-139620311	Enhancers Genic enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	156 gene(s)	inside rSNPs	diseases
27	nsv894384	chr9:139376426-139622024	Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	173 gene(s)	inside rSNPs	diseases
28	nsv894385	chr9:139376426-139647074	Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	199 gene(s)	inside rSNPs	diseases
29	nsv894386	chr9:139376426-139693992	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	208 gene(s)	inside rSNPs	diseases
30	nsv1039149	chr9:139376829-139991102	Active TSS Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	303 gene(s)	inside rSNPs	diseases
31	esv1820573	chr9:139377938-139643023	Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	197 gene(s)	inside rSNPs	diseases
32	esv1839109	chr9:139377938-139660589	Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Weak transcription Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	198 gene(s)	inside rSNPs	diseases
33	esv1796248	chr9:139380320-139590934	Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	117 gene(s)	inside rSNPs	diseases
34	esv1810467	chr9:139380320-139617985	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	127 gene(s)	inside rSNPs	diseases
35	esv1829857	chr9:139385438-139760041	Flanking Active TSS Enhancers Weak transcription Genic enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	212 gene(s)	inside rSNPs	diseases
36	esv1819204	chr9:139388365-139758238	Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	212 gene(s)	inside rSNPs	diseases
37	esv1803407	chr9:139393591-139643023	Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	176 gene(s)	inside rSNPs	diseases
38	esv1803979	chr9:139395473-139979276	Genic enhancers Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	267 gene(s)	inside rSNPs	diseases
39	esv1831778	chr9:139395473-139979276	Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	267 gene(s)	inside rSNPs	diseases
40	esv1821575	chr9:139395473-140068342	Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Enhancers Flanking Bivalent TSS/Enh Strong transcription Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	293 gene(s)	inside rSNPs	diseases
41	nsv8579	chr9:139399884-139654708	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	176 gene(s)	inside rSNPs	diseases
42	nsv894392	chr9:139403102-139669111	Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	177 gene(s)	inside rSNPs	diseases
43	nsv894394	chr9:139403770-139620311	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	133 gene(s)	inside rSNPs	diseases
44	nsv894397	chr9:139427066-139596420	Enhancers Bivalent/Poised TSS Weak transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	114 gene(s)	inside rSNPs	diseases
45	nsv894402	chr9:139457506-139634495	Weak transcription Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	158 gene(s)	inside rSNPs	diseases
46	esv2422220	chr9:139478587-140244550	Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	454 gene(s)	inside rSNPs	diseases
47	nsv894407	chr9:139483954-139590934	Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
48	nsv894408	chr9:139483954-139596420	Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
49	nsv894409	chr9:139483954-139860264	Transcr. at gene 5' and 3' Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	209 gene(s)	inside rSNPs	diseases
50	nsv1053781	chr9:139485146-139617379	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	101 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:139579400-139582800	Transcr. at gene 5' and 3'	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr9:139580400-139582800	Active TSS	H9 Cell Line	embryonic stem cell
3	chr9:139580800-139582800	Active TSS	iPS-15b Cell Line	embryonic stem cell
4	chr9:139581000-139582800	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
5	chr9:139581200-139582800	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr9:139581200-139583400	Enhancers	Fetal Lung	lung
7	chr9:139581800-139583200	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
8	chr9:139581800-139584800	Enhancers	Fetal Muscle Trunk	muscle
9	chr9:139581800-139585600	Enhancers	Lung	lung
10	chr9:139581800-139586600	Enhancers	Fetal Muscle Leg	muscle
11	chr9:139581800-139587600	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr9:139581800-139590000	Weak transcription	HSMMtube	muscle
13	chr9:139582000-139582800	Enhancers	Primary B cells from cord blood	blood
14	chr9:139582000-139583600	Enhancers	Fetal Stomach	stomach
15	chr9:139582000-139583600	Enhancers	Stomach Mucosa	stomach
16	chr9:139582000-139583800	Enhancers	Spleen	Spleen
17	chr9:139582000-139584600	Weak transcription	Colon Smooth Muscle	Colon
18	chr9:139582200-139582800	Bivalent Enhancer	Fetal Thymus	thymus
19	chr9:139582200-139582800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
20	chr9:139582200-139583000	Bivalent Enhancer	Placenta	Placenta
21	chr9:139582200-139583000	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
22	chr9:139582200-139583000	Flanking Active TSS	GM12878-XiMat	blood
23	chr9:139582200-139583200	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr9:139582200-139584200	Enhancers	Rectal Mucosa Donor 29	rectum
25	chr9:139582200-139590000	Weak transcription	HSMM	muscle
26	chr9:139582400-139582800	Flanking Active TSS	H1 Cell Line	embryonic stem cell
27	chr9:139582400-139583000	Enhancers	Primary hematopoietic stem cells	blood
28	chr9:139582400-139583000	Bivalent Enhancer	Brain Hippocampus Middle	brain
29	chr9:139582400-139583000	Enhancers	Fetal Heart	heart
30	chr9:139582400-139583000	Enhancers	Small Intestine	intestine
31	chr9:139582400-139583200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr9:139582400-139583200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
33	chr9:139582400-139583200	Enhancers	Primary hematopoietic stem cells short term culture	blood
34	chr9:139582400-139583200	Enhancers	Right Atrium	heart
35	chr9:139582400-139583400	Flanking Active TSS	Hela-S3	cervix
36	chr9:139582400-139584000	Enhancers	Sigmoid Colon	Sigmoid Colon
37	chr9:139582400-139584600	Weak transcription	Rectal Smooth Muscle	rectum
38	chr9:139582400-139584800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
39	chr9:139582400-139585000	Weak transcription	Duodenum Smooth Muscle	Duodenum
40	chr9:139582400-139585000	Enhancers	Skeletal Muscle Female	skeletal muscle
41	chr9:139582400-139586200	Enhancers	Esophagus	oesophagus
42	chr9:139582400-139587400	Weak transcription	HMEC	breast
43	chr9:139582600-139582800	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
44	chr9:139582600-139582800	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
45	chr9:139582600-139582800	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
46	chr9:139582600-139582800	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
47	chr9:139582600-139582800	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
48	chr9:139582600-139583000	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
49	chr9:139582600-139583000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
50	chr9:139582600-139583000	Enhancers	Primary B cells from peripheral blood	blood

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