Variant report

Variant	rs28667305
Chromosome Location	chr18:39906749-39906750
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11873660	1.00[AFR][1000 genomes]
rs28401487	1.00[AMR][1000 genomes]
rs28588676	1.00[AMR][1000 genomes]
rs28670432	1.00[AMR][1000 genomes]
rs488530	1.00[AMR][1000 genomes]
rs558536	1.00[AMR][1000 genomes]
rs558699	1.00[AMR][1000 genomes]
rs564870	1.00[AMR][1000 genomes]
rs73950894	1.00[AMR][1000 genomes]
rs8098491	1.00[AMR][1000 genomes]
rs9954143	1.00[AMR][1000 genomes]
rs9961405	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949609	chr18:39126941-40070286	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv1059409	chr18:39711099-40139446	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:39893200-39915200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr18:39906400-39907400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr18:39906400-39907400	Enhancers	Adipose Nuclei	Adipose
4	chr18:39906600-39907000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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