Variant report

Variant	rs2867001
Chromosome Location	chr4:79101268-79101269
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10001934	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1878441	0.88[AFR][1000 genomes]
rs376531	1.00[AMR][1000 genomes]
rs4499718	0.91[AFR][1000 genomes]
rs6533529	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6857654	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534024	chr4:78785189-79437403	ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv1009633	chr4:78887573-79652236	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
3	nsv525530	chr4:79024524-79266563	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	nsv879502	chr4:79052851-79144309	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv1010782	chr4:79057839-79387207	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
6	nsv829977	chr4:79082318-79110300	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	nsv999844	chr4:79092549-79165869	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:79090200-79104200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr4:79096200-79106200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr4:79097000-79104400	Weak transcription	Psoas Muscle	Psoas
4	chr4:79097200-79102000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr4:79097200-79108400	Weak transcription	Pancreas	Pancrea
6	chr4:79097800-79106000	Weak transcription	Fetal Kidney	kidney
7	chr4:79097800-79106200	Weak transcription	Fetal Lung	lung
8	chr4:79099800-79101400	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr4:79100200-79103600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr4:79100200-79109200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr4:79100400-79105200	Weak transcription	HepG2	liver
12	chr4:79100600-79102800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr4:79100600-79102800	Weak transcription	Fetal Intestine Large	intestine
14	chr4:79100600-79104200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr4:79100600-79111200	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr4:79100800-79102800	Weak transcription	Fetal Intestine Small	intestine
17	chr4:79101000-79104600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
18	chr4:79101000-79107000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
19	chr4:79101000-79112200	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr4:79101200-79105600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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