Variant report

Variant	rs28671378
Chromosome Location	chr7:129175085-129175086
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:129174530..129176611-chr7:129248438..129250911,2	K562	blood:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs13236970	0.83[ASN][1000 genomes]
rs4731587	0.88[ASN][1000 genomes]
rs59634934	1.00[ASN][1000 genomes]
rs688185	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831128	chr7:129063040-129240800	Weak transcription Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	esv3478069	chr7:129157163-129204221	Weak transcription Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	esv3478070	chr7:129157177-129204220	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:129150800-129175400	Weak transcription	Right Atrium	heart
2	chr7:129171200-129175200	Enhancers	HUES6 Cell Line	embryonic stem cell
3	chr7:129172200-129175400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr7:129172400-129175800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr7:129172600-129176000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr7:129173800-129178400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr7:129174000-129180400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr7:129174200-129176000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
9	chr7:129174400-129175200	Enhancers	Monocytes-CD14+_RO01746	blood
10	chr7:129174400-129175400	Enhancers	Primary monocytes fromperipheralblood	blood
11	chr7:129174400-129176400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr7:129174400-129177200	Enhancers	Primary T cells fromperipheralblood	blood
13	chr7:129174600-129176000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr7:129174800-129176600	Enhancers	Primary hematopoietic stem cells short term culture	blood
15	chr7:129174800-129183600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr7:129175000-129175400	Enhancers	Primary T killer memory cells from peripheral blood	blood
17	chr7:129175000-129176200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr7:129175000-129176600	Enhancers	Primary T helper naive cells from peripheral blood	blood
19	chr7:129175000-129176600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
20	chr7:129175000-129176600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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