Variant report

Variant	rs28671496
Chromosome Location	chr7:16599357-16599358
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10234331	1.00[AMR][1000 genomes]
rs57839487	1.00[AMR][1000 genomes]
rs58774802	1.00[AMR][1000 genomes]
rs59406256	1.00[AMR][1000 genomes]
rs61498161	1.00[AMR][1000 genomes]
rs61540132	1.00[AMR][1000 genomes]
rs73291283	1.00[AMR][1000 genomes]
rs73293213	1.00[AMR][1000 genomes]
rs73293598	1.00[AMR][1000 genomes]
rs73295204	1.00[AMR][1000 genomes]
rs73295214	1.00[AMR][1000 genomes]
rs73295216	1.00[AMR][1000 genomes]
rs73307921	1.00[AMR][1000 genomes]
rs73308339	1.00[AMR][1000 genomes]
rs73308341	1.00[AMR][1000 genomes]
rs73308385	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016642	chr7:15884061-16799788	Genic enhancers Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv1028125	chr7:16529160-16847225	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv887757	chr7:16568529-16615490	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:16596600-16602000	Weak transcription	K562	blood
2	chr7:16598800-16599400	Enhancers	Fetal Heart	heart
3	chr7:16599200-16599400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr7:16599200-16600600	Enhancers	HUVEC	blood vessel

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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