Variant report

Variant	rs28672256
Chromosome Location	chr15:57829595-57829596
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:57829364..57831242-chr15:57841384..57843647,2	MCF-7	breast:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs2172606	0.97[AFR][1000 genomes]
rs28393178	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28416157	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28417250	0.86[AFR][1000 genomes]
rs28489568	0.86[AFR][1000 genomes]
rs28609908	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28611414	0.83[AFR][1000 genomes]
rs28689990	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28714546	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73422836	1.00[AMR][1000 genomes]
rs73422852	1.00[AMR][1000 genomes]
rs73422887	1.00[AMR][1000 genomes]
rs73422892	1.00[AMR][1000 genomes]
rs73422900	1.00[AMR][1000 genomes]
rs73424705	1.00[AMR][1000 genomes]
rs74016316	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045611	chr15:57350965-58070807	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv1054547	chr15:57600488-57977659	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv833022	chr15:57657412-57830112	Weak transcription Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv904255	chr15:57790436-57907574	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:57802600-57846600	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr15:57803200-57842800	Weak transcription	Aorta	Aorta
3	chr15:57819200-57841000	Weak transcription	Esophagus	oesophagus
4	chr15:57819800-57833000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr15:57819800-57840000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr15:57820600-57834000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr15:57821800-57842800	Strong transcription	Liver	Liver
8	chr15:57822800-57833000	Weak transcription	HepG2	liver
9	chr15:57822800-57834000	Weak transcription	Colon Smooth Muscle	Colon
10	chr15:57825000-57835800	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr15:57825400-57831200	Weak transcription	Stomach Smooth Muscle	stomach
12	chr15:57826000-57834200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr15:57827000-57829600	Strong transcription	H1 Cell Line	embryonic stem cell
14	chr15:57827200-57830000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
15	chr15:57827200-57832200	Strong transcription	HUES48 Cell Line	embryonic stem cell
16	chr15:57827400-57832000	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr15:57827400-57834200	Weak transcription	Lung	lung
18	chr15:57827600-57830200	Weak transcription	Fetal Stomach	stomach
19	chr15:57827600-57840600	Weak transcription	Fetal Lung	lung
20	chr15:57828000-57833400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr15:57828200-57830000	Weak transcription	Psoas Muscle	Psoas
22	chr15:57828200-57831800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr15:57828400-57830800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr15:57828600-57830600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr15:57828600-57830600	Enhancers	NHDF-Ad	bronchial
26	chr15:57828600-57832400	Enhancers	Fetal Kidney	kidney
27	chr15:57828800-57830000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr15:57828800-57830000	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr15:57828800-57830000	Enhancers	Pancreas	Pancrea
30	chr15:57828800-57830200	Enhancers	Osteobl	bone
31	chr15:57829000-57829600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr15:57829000-57829600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
33	chr15:57829000-57829600	Enhancers	Gastric	stomach
34	chr15:57829000-57829600	Enhancers	Right Ventricle	heart
35	chr15:57829000-57829800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr15:57829000-57829800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
37	chr15:57829000-57829800	Flanking Active TSS	HSMMtube	muscle
38	chr15:57829000-57830000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr15:57829000-57830000	Enhancers	Stomach Mucosa	stomach
40	chr15:57829000-57830000	Enhancers	NHLF	lung
41	chr15:57829000-57830200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr15:57829000-57830200	Enhancers	Muscle Satellite Cultured Cells	--
43	chr15:57829000-57830200	Enhancers	NH-A	brain
44	chr15:57829000-57830400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr15:57829000-57830600	Enhancers	Brain Anterior Caudate	brain
46	chr15:57829000-57830600	Enhancers	HSMM	muscle
47	chr15:57829000-57830800	Enhancers	HUVEC	blood vessel
48	chr15:57829000-57832000	Enhancers	Fetal Muscle Leg	muscle
49	chr15:57829200-57829600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
50	chr15:57829200-57829600	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung

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