Variant report

Variant	rs28672812
Chromosome Location	chr4:76487054-76487055
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11099642	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11728930	0.83[ASN][1000 genomes]
rs12646094	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2306174	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28391812	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28715769	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2903699	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56971713	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv594687	chr4:76154064-76502748	Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Enhancers Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv534570	chr4:76214619-76498362	ZNF genes & repeats Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:76485000-76487600	Enhancers	Placenta	Placenta
2	chr4:76486600-76487400	Enhancers	H9 Cell Line	embryonic stem cell
3	chr4:76486800-76487200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr4:76486800-76487400	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr4:76486800-76487600	Enhancers	H1 Cell Line	embryonic stem cell
6	chr4:76486800-76487600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr4:76486800-76487600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr4:76487000-76487200	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
9	chr4:76487000-76487400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
10	chr4:76487000-76487400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr4:76487000-76487400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr4:76487000-76487400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr4:76487000-76487400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr4:76487000-76487600	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr4:76487000-76487600	Enhancers	HMEC	breast
16	chr4:76487000-76487600	Enhancers	NHEK	skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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