Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10950253	1.00[CEU][hapmap];0.86[CHB][hapmap];0.93[EUR][1000 genomes]
rs10950254	1.00[CEU][hapmap];0.86[CHB][hapmap];0.93[EUR][1000 genomes]
rs10950255	1.00[CEU][hapmap];0.86[CHB][hapmap];0.93[EUR][1000 genomes]
rs11764495	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11765235	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11769358	0.93[EUR][1000 genomes]
rs11769361	0.93[EUR][1000 genomes]
rs11769394	0.93[EUR][1000 genomes]
rs11769421	0.93[EUR][1000 genomes]
rs17522536	1.00[CEU][hapmap];0.86[CHB][hapmap];0.93[EUR][1000 genomes]
rs1882569	1.00[CEU][hapmap];0.86[CHB][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs1922509	0.89[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1922510	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1922511	0.89[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs28540223	0.93[EUR][1000 genomes]
rs2867406	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4717588	0.86[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs55709743	0.93[EUR][1000 genomes]
rs62457833	0.93[EUR][1000 genomes]
rs6974250	0.93[EUR][1000 genomes]
rs7793970	1.00[CEU][hapmap];0.86[CHB][hapmap];0.93[EUR][1000 genomes]
rs7795083	0.92[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519090	chr7:70085934-71071896	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1015261	chr7:70404302-71255933	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	nsv888343	chr7:70641761-70743033	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv1033155	chr7:70712368-70757929	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:70710400-70731800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr7:70721000-70731800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr7:70723000-70731600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr7:70727400-70731200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr7:70729200-70733800	Weak transcription	Left Ventricle	heart
6	chr7:70729400-70736200	Weak transcription	Ovary	ovary
7	chr7:70730400-70731200	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
8	chr7:70730600-70731000	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
9	chr7:70730600-70731000	ZNF genes & repeats	Aorta	Aorta
10	chr7:70730600-70731200	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
11	chr7:70730800-70731400	Weak transcription	Fetal Heart	heart
12	chr7:70730800-70734400	Weak transcription	Fetal Lung	lung

Quick Search: