Variant report

Variant	rs28674795
Chromosome Location	chr1:45994992-45994993
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:45980210..45995142-chr1:46046095..46057139,89	K562	blood:
2	chr1:45974558..45995867-chr1:46046173..46057010,94	K562	blood:
3	chr1:45993856..45997631-chr1:46016442..46019336,3	K562	blood:
4	chr1:45987312..45988886-chr1:45994848..45996486,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000132780	Chromatin interaction
ENSG00000117450	Chromatin interaction
ENSG00000117448	Chromatin interaction

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs11211125	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12065695	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12066809	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12070890	1.00[ASN][1000 genomes]
rs12083690	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16832545	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16832559	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1855621	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2934860	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2934861	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2934863	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2934864	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2991965	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2991967	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2991969	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2991984	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2993256	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2993260	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2993261	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3014222	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3014223	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3014224	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3014226	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs35103566	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs36053912	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs57910611	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59050426	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs60347972	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6664588	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6671347	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6677135	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6699702	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72478602	1.00[ASN][1000 genomes]
rs72898313	1.00[AMR][1000 genomes]
rs72898315	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72898320	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72898323	1.00[AMR][1000 genomes]
rs72900311	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7412911	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7536559	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7550744	1.00[ASN][1000 genomes]
rs9429080	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9429083	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9429164	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9429165	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498036	chr1:45428030-46050934	Active TSS Enhancers Flanking Active TSS Genic enhancers Weak transcription Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	191 gene(s)	inside rSNPs	diseases
2	esv1795802	chr1:45819489-46009818	Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	126 gene(s)	inside rSNPs	diseases
3	esv1831217	chr1:45819489-46009818	Strong transcription Enhancers Genic enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	126 gene(s)	inside rSNPs	diseases
4	nsv530016	chr1:45868543-46069020	Flanking Active TSS Genic enhancers Weak transcription Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	149 gene(s)	inside rSNPs	diseases
5	nsv829726	chr1:45897581-46103186	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	148 gene(s)	inside rSNPs	diseases
6	nsv529631	chr1:45905936-46335246	Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	207 gene(s)	inside rSNPs	diseases
7	nsv932680	chr1:45935520-46686477	Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	232 gene(s)	inside rSNPs	diseases
8	nsv868828	chr1:45953923-46686477	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	232 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:45988400-45997200	Weak transcription	Monocytes-CD14+_RO01746	blood
2	chr1:45989200-46000600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr1:45992800-45998600	Weak transcription	HepG2	liver
4	chr1:45992800-46002400	Weak transcription	Fetal Intestine Small	intestine
5	chr1:45994400-45995400	Enhancers	Placenta	Placenta

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