Variant report

Variant	rs28675065
Chromosome Location	chr7:97480681-97480682
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1229539	0.82[ASN][1000 genomes]
rs1912445	0.83[ASN][1000 genomes]
rs1912446	0.83[ASN][1000 genomes]
rs1912447	0.83[ASN][1000 genomes]
rs2530140	0.80[ASN][1000 genomes]
rs2665456	0.82[ASN][1000 genomes]
rs4568556	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031371	chr7:97312452-98070538	Flanking Active TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv428178	chr7:97402756-97648029	Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Weak transcription Enhancers Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	esv2758124	chr7:97476284-97648029	Strong transcription Bivalent/Poised TSS Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
4	esv2759546	chr7:97476284-97648029	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:97472800-97483000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr7:97473000-97480800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr7:97473400-97480800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr7:97474400-97480800	Weak transcription	Brain Germinal Matrix	brain
5	chr7:97474800-97482600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr7:97475000-97492800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr7:97476000-97480800	Weak transcription	Primary B cells from cord blood	blood
8	chr7:97477000-97481200	Weak transcription	Brain Substantia Nigra	brain
9	chr7:97477200-97485400	Weak transcription	Primary hematopoietic stem cells	blood
10	chr7:97477400-97480800	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr7:97477400-97481200	Weak transcription	Pancreas	Pancrea
12	chr7:97477400-97481200	Weak transcription	HSMM	muscle
13	chr7:97477600-97500600	Weak transcription	Thymus	Thymus
14	chr7:97477800-97480800	Weak transcription	Primary T cells fromperipheralblood	blood
15	chr7:97477800-97481400	Weak transcription	Fetal Lung	lung
16	chr7:97478400-97481000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr7:97478600-97480800	Weak transcription	Primary B cells from peripheral blood	blood
18	chr7:97478600-97480800	Weak transcription	Primary T helper cells fromperipheralblood	blood
19	chr7:97478600-97480800	Weak transcription	A549	lung
20	chr7:97478600-97481000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
21	chr7:97478600-97481200	Weak transcription	Stomach Smooth Muscle	stomach
22	chr7:97478600-97483400	Weak transcription	Osteobl	bone
23	chr7:97478800-97480800	Weak transcription	H1 Cell Line	embryonic stem cell
24	chr7:97478800-97480800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
25	chr7:97478800-97480800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
26	chr7:97478800-97480800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
27	chr7:97478800-97481000	Weak transcription	Primary T cells from cord blood	blood
28	chr7:97478800-97481000	Weak transcription	Rectal Mucosa Donor 29	rectum
29	chr7:97478800-97481200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
30	chr7:97479000-97480800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr7:97479000-97480800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
32	chr7:97479000-97480800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
33	chr7:97479000-97480800	Weak transcription	Cortex derived primary cultured neurospheres	brain
34	chr7:97479000-97480800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr7:97479000-97480800	Weak transcription	Fetal Muscle Trunk	muscle
36	chr7:97479000-97480800	Weak transcription	Fetal Muscle Leg	muscle
37	chr7:97479000-97480800	Weak transcription	Ovary	ovary
38	chr7:97479000-97481000	Weak transcription	HUES64 Cell Line	embryonic stem cell
39	chr7:97479000-97481200	Weak transcription	HepG2	liver
40	chr7:97479000-97501000	Weak transcription	Fetal Intestine Large	intestine
41	chr7:97479200-97480800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
42	chr7:97479200-97480800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
43	chr7:97479200-97480800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr7:97479200-97480800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr7:97479200-97481000	Weak transcription	Aorta	Aorta
46	chr7:97479200-97481000	Weak transcription	Duodenum Mucosa	Duodenum
47	chr7:97479200-97481000	Weak transcription	Gastric	stomach
48	chr7:97479200-97481000	Weak transcription	Sigmoid Colon	Sigmoid Colon
49	chr7:97479200-97481200	Weak transcription	H9 Cell Line	embryonic stem cell
50	chr7:97479200-97486200	Weak transcription	Small Intestine	intestine

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