Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs12655932	0.80[CHB][hapmap]
rs12659666	0.80[CHB][hapmap]
rs13357987	0.80[CHB][hapmap]
rs17381296	0.80[CHB][hapmap]
rs17382278	0.80[CHB][hapmap]
rs17384285	0.81[CHB][hapmap]
rs17440508	0.80[CHB][hapmap]
rs17440818	0.80[CHB][hapmap]
rs17440916	0.80[CHB][hapmap]
rs17441920	0.80[CHB][hapmap]
rs286755	0.95[YRI][hapmap];0.82[AFR][1000 genomes]
rs286821	0.81[CHB][hapmap]
rs289232	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34385	0.81[CHB][hapmap];0.82[MEX][hapmap]
rs34410	0.81[CHB][hapmap]
rs4144476	0.80[CHB][hapmap]
rs4144478	0.83[CHB][hapmap]
rs6865057	0.80[CHB][hapmap]
rs7731562	0.80[CHB][hapmap]
rs7735773	0.80[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882682	chr5:107213361-107458336	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv534281	chr5:107357579-107674981	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv1029650	chr5:107370079-107435314	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107388400-107510800	Weak transcription	Primary B cells from cord blood	blood
2	chr5:107396800-107409400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr5:107399200-107403400	Weak transcription	Fetal Lung	lung
4	chr5:107400200-107414600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr5:107402800-107403200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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