Variant report

Variant	rs28675895
Chromosome Location	chr4:97182405-97182406
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10031383	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28411720	1.00[AMR][1000 genomes]
rs28588744	1.00[AMR][1000 genomes]
rs28662998	1.00[AFR][1000 genomes]
rs58537993	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830013	chr4:97033125-97204291	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1003868	chr4:97068155-97222544	Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Weak transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv470057	chr4:97104880-97311657	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv461589	chr4:97104881-97311657	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv594916	chr4:97104881-97311657	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv879631	chr4:97114706-97263153	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv879632	chr4:97118539-97308914	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv879633	chr4:97125086-97263153	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	esv2763381	chr4:97140746-97193871	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:97172200-97183200	Weak transcription	Gastric	stomach
2	chr4:97181000-97182600	Enhancers	HUES6 Cell Line	embryonic stem cell
3	chr4:97181000-97184200	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr4:97181200-97182600	Enhancers	H1 Cell Line	embryonic stem cell
5	chr4:97181200-97182600	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr4:97181200-97183000	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr4:97181200-97183200	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr4:97181400-97182600	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr4:97181400-97183200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr4:97181600-97185000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr4:97182000-97185000	Weak transcription	Fetal Intestine Large	intestine
12	chr4:97182400-97182600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr4:97182400-97182600	Enhancers	Fetal Brain Male	brain
14	chr4:97182400-97183000	Enhancers	iPS-20b Cell Line	embryonic stem cell
15	chr4:97182400-97183400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
16	chr4:97182400-97183600	Enhancers	Stomach Mucosa	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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