Variant report

Variant	rs28676298
Chromosome Location	chr4:144246972-144246973
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10025700	0.92[AFR][1000 genomes]
rs13105156	0.92[AFR][1000 genomes]
rs13133540	0.89[AFR][1000 genomes]
rs13146448	0.92[AFR][1000 genomes]
rs17017563	1.00[ASN][1000 genomes]
rs17017629	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17017662	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28377860	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28408110	0.89[AFR][1000 genomes]
rs28448391	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28680635	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28846534	0.92[AFR][1000 genomes]
rs6825973	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6826079	0.92[AFR][1000 genomes]
rs72947118	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9990577	0.92[AFR][1000 genomes]
rs9993972	0.92[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033902	chr4:144114413-144285772	Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	esv3332574	chr4:144239396-144259577	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	n/a
3	nsv1026110	chr4:144239825-144292148	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:144235000-144247000	Weak transcription	Right Atrium	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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