Variant report

Variant	rs28676893
Chromosome Location	chr2:79205094-79205095
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11126690	0.87[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs11893407	0.87[ASN][1000 genomes]
rs11898645	0.83[ASN][1000 genomes]
rs6741997	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916498	chr2:78429997-79340383	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	esv3584761	chr2:78545020-79430628	Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv834272	chr2:79056890-79223476	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv1795979	chr2:79075753-79226086	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv874374	chr2:79198620-79236614	Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:79192000-79206400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr2:79204200-79205200	Enhancers	Primary hematopoietic stem cells short term culture	blood
3	chr2:79204200-79205200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr2:79204200-79205400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr2:79204200-79206000	Enhancers	Primary neutrophils fromperipheralblood	blood
6	chr2:79204200-79206000	Enhancers	Primary B cells from cord blood	blood
7	chr2:79204200-79206800	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr2:79204200-79207800	Enhancers	GM12878-XiMat	blood
9	chr2:79204400-79205400	Enhancers	Primary B cells from peripheral blood	blood
10	chr2:79204400-79205400	Enhancers	Primary hematopoietic stem cells	blood
11	chr2:79204400-79205800	Enhancers	Monocytes-CD14+_RO01746	blood
12	chr2:79204800-79206400	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr2:79204800-79206600	Enhancers	HUES48 Cell Line	embryonic stem cell
14	chr2:79204800-79206600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
15	chr2:79205000-79206600	Enhancers	iPS-18 Cell Line	embryonic stem cell
16	chr2:79205000-79206800	Enhancers	HUES6 Cell Line	embryonic stem cell
17	chr2:79205000-79206800	Enhancers	iPS-20b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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