Variant report

Variant	rs28677013
Chromosome Location	chr3:89013181-89013182
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs12495112	0.82[ASN][1000 genomes]
rs12495136	0.82[ASN][1000 genomes]
rs12635585	0.82[ASN][1000 genomes]
rs1390709	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2132585	0.82[ASN][1000 genomes]
rs2132587	0.82[ASN][1000 genomes]
rs4270512	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4855820	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs56655297	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6803153	0.82[ASN][1000 genomes]
rs7642699	0.82[ASN][1000 genomes]
rs7643738	0.82[ASN][1000 genomes]
rs885393	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs953476	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9823094	0.82[ASN][1000 genomes]
rs9849740	0.80[ASN][1000 genomes]
rs9882138	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834759	chr3:88901229-89105366	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1002060	chr3:88984502-89047104	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv536637	chr3:88984502-89047104	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:89009200-89014600	Weak transcription	HSMM	muscle
2	chr3:89011600-89013200	Enhancers	Fetal Heart	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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