Variant report

Variant	rs28679800
Chromosome Location	chr2:178601893-178601894
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1438037	0.83[AFR][1000 genomes]
rs1438045	0.94[ASN][1000 genomes]
rs1465830	0.83[ASN][1000 genomes]
rs16865767	0.94[ASN][1000 genomes]
rs16865771	0.94[ASN][1000 genomes]
rs1866211	0.85[AFR][1000 genomes]
rs1866212	0.85[AFR][1000 genomes]
rs1975324	0.85[AFR][1000 genomes]
rs2365889	0.85[AFR][1000 genomes]
rs2886498	0.85[AFR][1000 genomes]
rs3754994	0.83[AFR][1000 genomes]
rs3770029	0.89[ASN][1000 genomes]
rs3770034	0.85[AFR][1000 genomes]
rs6433692	0.83[ASN][1000 genomes]
rs6433693	0.85[AFR][1000 genomes]
rs6756994	0.83[ASN][1000 genomes]
rs73028328	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999086	chr2:178262348-178773585	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv536055	chr2:178262348-178773585	Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:178594000-178605600	Weak transcription	Fetal Muscle Leg	muscle
2	chr2:178597800-178610200	Weak transcription	Adipose Nuclei	Adipose
3	chr2:178598400-178603200	Weak transcription	Ovary	ovary
4	chr2:178599200-178604600	Weak transcription	Fetal Kidney	kidney

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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