Variant report

Variant	rs28679859
Chromosome Location	chr5:74070429-74070430
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:74070106..74071963-chr5:74087987..74090742,2	K562	blood:
2	chr5:74070152..74072138-chr5:74074887..74076433,2	K562	blood:
3	chr5:74063024..74065513-chr5:74069394..74071434,2	K562	blood:
4	chr5:74063430..74066095-chr5:74068768..74070600,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000164347	Chromatin interaction
ENSG00000199645	Chromatin interaction
ENSG00000164346	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv598653	chr5:73992881-74095542	Active TSS Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv968948	chr5:74069688-74072622	Strong transcription Weak transcription Genic enhancers	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:74064000-74071000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr5:74064000-74076000	Weak transcription	Esophagus	oesophagus
3	chr5:74064000-74077200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr5:74064000-74112400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr5:74064200-74070600	Weak transcription	Pancreas	Pancrea
6	chr5:74064200-74073000	Weak transcription	Gastric	stomach
7	chr5:74064200-74073800	Weak transcription	Small Intestine	intestine
8	chr5:74064200-74076000	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr5:74064200-74086000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr5:74064200-74102000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr5:74064400-74073800	Weak transcription	Stomach Mucosa	stomach
12	chr5:74064400-74076600	Weak transcription	Rectal Smooth Muscle	rectum
13	chr5:74064400-74079600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr5:74064400-74086600	Weak transcription	Fetal Heart	heart
15	chr5:74064400-74134600	Weak transcription	Fetal Brain Male	brain
16	chr5:74064600-74074400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr5:74064600-74079400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr5:74064600-74079600	Strong transcription	HUES64 Cell Line	embryonic stem cell
19	chr5:74064800-74072400	Strong transcription	Cortex derived primary cultured neurospheres	brain
20	chr5:74064800-74074000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
21	chr5:74064800-74074400	Strong transcription	Osteobl	bone
22	chr5:74064800-74074600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr5:74064800-74074600	Strong transcription	Primary T helper cells PMA-I stimulated	--
24	chr5:74064800-74074600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr5:74064800-74074800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr5:74064800-74074800	Strong transcription	Primary monocytes fromperipheralblood	blood
27	chr5:74064800-74075000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr5:74064800-74075000	Strong transcription	Monocytes-CD14+_RO01746	blood
29	chr5:74064800-74075000	Strong transcription	NH-A	brain
30	chr5:74064800-74079400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr5:74064800-74079600	Strong transcription	HUES48 Cell Line	embryonic stem cell
32	chr5:74064800-74080000	Strong transcription	H1 Cell Line	embryonic stem cell
33	chr5:74064800-74080400	Strong transcription	HUES6 Cell Line	embryonic stem cell
34	chr5:74064800-74101200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
35	chr5:74065000-74070800	Strong transcription	NHDF-Ad	bronchial
36	chr5:74065000-74072000	Strong transcription	Muscle Satellite Cultured Cells	--
37	chr5:74065000-74072000	Strong transcription	Brain Germinal Matrix	brain
38	chr5:74065000-74072000	Strong transcription	Fetal Muscle Leg	muscle
39	chr5:74065000-74072400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr5:74065000-74072400	Strong transcription	Primary T cells from cord blood	blood
41	chr5:74065000-74072400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
42	chr5:74065000-74072600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr5:74065000-74072600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr5:74065000-74073000	Strong transcription	Fetal Lung	lung
45	chr5:74065000-74074000	Strong transcription	Fetal Intestine Large	intestine
46	chr5:74065000-74074200	Strong transcription	Placenta	Placenta
47	chr5:74065000-74074400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr5:74065000-74074800	Strong transcription	Fetal Thymus	thymus
49	chr5:74065000-74074800	Strong transcription	Rectal Mucosa Donor 29	rectum
50	chr5:74065000-74077800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood

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