Variant report

Variant	rs286808
Chromosome Location	chr5:107459376-107459377
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs286805	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs286821	0.92[CHB][hapmap];0.85[JPT][hapmap];0.95[YRI][hapmap];0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34385	0.92[CHB][hapmap];0.85[JPT][hapmap];0.91[YRI][hapmap];0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34410	0.92[CHB][hapmap];0.86[JPT][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534281	chr5:107357579-107674981	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv830441	chr5:107450392-107614557	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107388400-107510800	Weak transcription	Primary B cells from cord blood	blood
2	chr5:107437800-107463800	Weak transcription	Esophagus	oesophagus
3	chr5:107449000-107467200	Weak transcription	Aorta	Aorta
4	chr5:107457000-107459600	Weak transcription	Fetal Intestine Small	intestine
5	chr5:107457800-107460000	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr5:107458400-107459800	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr5:107458400-107459800	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr5:107458400-107460200	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr5:107458400-107460600	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr5:107458600-107460600	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr5:107459000-107459800	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr5:107459200-107459800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr5:107459200-107460600	Enhancers	HUES48 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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