Variant report

Variant	rs28682326
Chromosome Location	chr4:110724444-110724445
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10004390	1.00[EUR][1000 genomes]
rs10007208	1.00[EUR][1000 genomes]
rs1007050	1.00[EUR][1000 genomes]
rs10488880	1.00[EUR][1000 genomes]
rs11936595	1.00[EUR][1000 genomes]
rs11940838	1.00[EUR][1000 genomes]
rs17040933	1.00[EUR][1000 genomes]
rs28361433	1.00[EUR][1000 genomes]
rs28437024	1.00[EUR][1000 genomes]
rs4698796	1.00[EUR][1000 genomes]
rs56285361	1.00[EUR][1000 genomes]
rs56737575	1.00[EUR][1000 genomes]
rs6533467	1.00[EUR][1000 genomes]
rs6828254	1.00[EUR][1000 genomes]
rs6829540	1.00[EUR][1000 genomes]
rs72892672	1.00[EUR][1000 genomes]
rs73839166	1.00[EUR][1000 genomes]
rs7681770	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530156	chr4:110721397-110911297	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110722600-110736200	Weak transcription	Pancreas	Pancrea
2	chr4:110722800-110735800	Weak transcription	Brain Hippocampus Middle	brain
3	chr4:110723400-110725600	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr4:110723800-110724600	Enhancers	Gastric	stomach
5	chr4:110723800-110727200	Enhancers	HepG2	liver
6	chr4:110724000-110725000	Weak transcription	Spleen	Spleen
7	chr4:110724000-110725600	Weak transcription	Fetal Intestine Large	intestine
8	chr4:110724000-110725600	Weak transcription	Fetal Intestine Small	intestine
9	chr4:110724000-110725800	Enhancers	Liver	Liver
10	chr4:110724400-110725600	Weak transcription	K562	blood
11	chr4:110724400-110735800	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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