Variant report

Variant	rs28683543
Chromosome Location	chr8:19593727-19593728
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10100391	0.92[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs10111307	0.95[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs10217024	0.92[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1027264	0.92[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10503664	0.92[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs17091182	0.92[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs17091190	0.92[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs17091238	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17091251	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66534928	1.00[ASN][1000 genomes]
rs73202595	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7843101	0.95[EUR][1000 genomes]
rs7843107	0.92[AFR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949636	chr8:18957705-19664732	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv948861	chr8:19199688-19609029	Strong transcription Enhancers Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv949304	chr8:19199688-19625912	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
4	nsv890625	chr8:19368697-19799641	Strong transcription Weak transcription Enhancers Bivalent Enhancer Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
5	nsv1021575	chr8:19430653-19623452	Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv1021731	chr8:19515149-19643313	Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
7	nsv610759	chr8:19561997-20068842	Enhancers Strong transcription Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:19575400-19596800	Weak transcription	Monocytes-CD14+_RO01746	blood
2	chr8:19577800-19599000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr8:19587400-19597000	Weak transcription	Brain Hippocampus Middle	brain
4	chr8:19587400-19602800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr8:19587600-19600800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr8:19588600-19613400	Weak transcription	Pancreas	Pancrea
7	chr8:19588800-19596400	Weak transcription	Primary T helper cells PMA-I stimulated	--
8	chr8:19590600-19596600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
9	chr8:19591200-19595200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
10	chr8:19591200-19596800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr8:19591600-19597000	Weak transcription	Right Atrium	heart
12	chr8:19591600-19597600	Weak transcription	Left Ventricle	heart
13	chr8:19591600-19599800	Weak transcription	Right Ventricle	heart
14	chr8:19591800-19602800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr8:19592000-19594000	Weak transcription	Primary B cells from cord blood	blood
16	chr8:19592000-19595600	Weak transcription	Primary T helper cells fromperipheralblood	blood
17	chr8:19592200-19603000	Weak transcription	Hela-S3	cervix
18	chr8:19592400-19595000	Weak transcription	A549	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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